C. elegans Gene: sptl-2 - WBGene00018398 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00018398
Namesptl-2
DescriptionCaenorhabditis elegans Protein SPTL-2, isoform b [Source:RefSeq mRNA;Acc:NM_072663]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q95zt7
Orthologs(s)44 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
2.18e3
  • 2.18e3
94.29
  • 94.29
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000068embryo stage
2.58e3
  • 2.58e3
  • 2.92e3
  • 5.68e3
  • 6.52e3
  • 7.65e3
  • 8.28e3
  • 1.08e4
  • 1.12e4
  • 1.13e4
  • 1.80e4
93.23
  • 93.23
  • 92.35
  • 85.11
  • 82.91
  • 79.95
  • 78.30
  • 71.82
  • 70.56
  • 70.29
  • 52.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
2.78e3
  • 2.78e3
  • 5.03e3
  • 5.44e3
  • 5.65e3
  • 5.73e3
  • 6.19e3
  • 6.61e3
  • 6.64e3
  • 8.29e3
  • 1.04e4
  • 1.09e4
  • 1.17e4
  • 1.42e4
  • 1.42e4
92.72
  • 92.72
  • 86.82
  • 85.73
  • 85.20
  • 84.98
  • 83.77
  • 82.68
  • 82.59
  • 78.27
  • 72.65
  • 71.33
  • 69.44
  • 62.88
  • 62.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
6.09e3
  • 6.09e3
  • 8.19e3
  • 9.32e3
  • 9.54e3
  • 1.04e4
84.03
  • 84.03
  • 78.53
  • 75.57
  • 74.98
  • 72.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species7 genesCompare expression
Bilateria25 species44 genesCompare expression

Orthology information comes from OMA : WBGene00018398.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : WBGene00018398.

Cross-references

EnsemblWBGene00018398 (sptl-2)
WormBaseWBGene00018398
EMBLFO081377
Uniprot/SWISSPROTQ20375, SPTC2_CAEEL

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