We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

C. elegans Gene: R05F9.6 - WBGene00019890 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00019890
NameR05F9.6
DescriptionCaenorhabditis elegans Protein R05F9.6 (R05F9.6) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_062485]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)41 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
1.13e3
  • 1.13e3
  • 1.23e3
  • 1.29e3
  • 2.04e3
  • 2.28e3
97.05
  • 97.05
  • 96.77
  • 96.61
  • 94.65
  • 94.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:0000106zygote stage
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:00072322 cell stage
  • UBERON:0000107cleavage stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000068embryo stage
1.25e3
  • 1.25e3
  • 1.44e3
  • 2.64e3
  • 2.76e3
  • 4.67e3
  • 5.50e3
  • 6.84e3
  • 7.58e3
  • 7.96e3
  • 8.05e3
  • 8.14e3
  • 1.77e4
96.73
  • 96.73
  • 96.22
  • 93.08
  • 92.77
  • 87.75
  • 85.57
  • 82.07
  • 80.14
  • 79.12
  • 78.90
  • 78.66
  • 53.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
1.32e3
  • 1.32e3
  • 1.41e3
96.55
  • 96.55
  • 96.31
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000104life cycle
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • UBERON:0000068embryo stage
1.49e3
  • 1.49e3
  • 1.54e3
  • 1.57e3
  • 1.71e3
  • 1.78e3
  • 1.83e3
  • 2.23e3
  • 2.28e3
  • 2.41e3
  • 2.48e3
  • 2.62e3
  • 2.79e3
  • 4.83e3
  • 8.28e3
96.11
  • 96.11
  • 95.96
  • 95.90
  • 95.52
  • 95.34
  • 95.20
  • 94.15
  • 94.03
  • 93.67
  • 93.51
  • 93.13
  • 92.69
  • 87.33
  • 78.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
9.61e3
  • 9.61e3
74.81
  • 74.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa5 species5 genesCompare expression
Bilateria25 species41 genesCompare expression

Orthology information comes from OMA : WBGene00019890.

Cross-references

EnsemblWBGene00019890 (R05F9.6)
WormBaseWBGene00019890
EMBLFO081120
Uniprot/SPTREMBLQ21742, Q21742_CAEEL

Do not show this banner again