C. elegans Gene: ogdh-1 - WBGene00020679 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00020679
Nameogdh-1
DescriptionCaenorhabditis elegans Protein OGDH-1 (ogdh-1) mRNA, complete cds [Source:RefSeq mRNA;Acc:NM_068216]
OrganismCaenorhabditis elegans (nematode)
Orthologs(s)45 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000106zygote stage
  • UBERON:0000107cleavage stage
  • WBls:0000024L1 larva Ce (C elegans)
  • UBERON:00072322 cell stage
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
775
  • 775
  • 787
  • 995
  • 1.90e3
  • 2.29e3
  • 2.61e3
  • 2.84e3
  • 3.63e3
  • 3.76e3
  • 4.30e3
  • 4.60e3
  • 1.46e4
97.97
  • 97.97
  • 97.94
  • 97.39
  • 95.02
  • 94.01
  • 93.17
  • 92.56
  • 90.48
  • 90.14
  • 88.73
  • 87.95
  • 61.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • UBERON:0000066fully formed stage
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
1.14e3
  • 1.14e3
  • 1.51e3
  • 1.57e3
  • 1.83e3
  • 2.23e3
97.02
  • 97.02
  • 96.04
  • 95.88
  • 95.21
  • 94.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • UBERON:0000068embryo stage
1.27e3
  • 1.27e3
  • 1.63e3
  • 1.82e3
  • 1.94e3
  • 2.13e3
  • 2.70e3
  • 2.93e3
  • 3.39e3
  • 3.68e3
  • 3.98e3
  • 4.04e3
  • 5.16e3
  • 5.22e3
  • 7.17e3
96.67
  • 96.67
  • 95.74
  • 95.23
  • 94.92
  • 94.41
  • 92.92
  • 92.32
  • 91.11
  • 90.35
  • 89.57
  • 89.42
  • 86.48
  • 86.32
  • 81.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
2.28e3
  • 2.28e3
94.02
  • 94.02
AEIR
  • AEIR
WBbt:0005784germ line (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
  • 5.86e3
87.67
  • 87.67
  • 84.64
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Ecdysozoa6 species6 genesCompare expression
Bilateria25 species45 genesCompare expression

Orthology information comes from OMA : WBGene00020679.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : WBGene00020679.

Cross-references

EnsemblWBGene00020679 (ogdh-1)
WormBaseWBGene00020679
EMBLFO081256
Uniprot/SPTREMBLU4PC51, U4PC51_CAEEL
Uniprot/SWISSPROTO61199, ODO1_CAEEL

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