C. elegans Gene: pcp-5 - WBGene00022801 - Caenorhabditis elegans (nematode)

General information

Ensembl IDWBGene00022801
Namepcp-5
DescriptionCaenorhabditis elegans Protein PCP-5, isoform b [Source:RefSeq mRNA;Acc:NM_066317]
OrganismCaenorhabditis elegans (nematode)
Synonym(s)q95pw3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • WBls:000000928-cell embryo Ce (C elegans)
  • UBERON:0000109gastrula stage
  • UBERON:0000068embryo stage
  • UBERON:00072322 cell stage
  • WBls:0000038L4 larva Ce (C elegans)
  • UBERON:0000107cleavage stage
  • UBERON:0000106zygote stage
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
  • WBls:0000063newly molted young adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:0000024L1 larva Ce (C elegans)
1.59e3
  • 1.59e3
  • 1.79e3
  • 2.17e3
  • 2.59e3
  • 3.11e3
  • 3.19e3
  • 3.66e3
  • 4.30e3
  • 4.53e3
  • 4.73e3
  • 6.20e3
  • 7.56e3
  • 8.96e3
95.86180
  • 95.86180
  • 95.31579
  • 94.32547
  • 93.22636
  • 91.87146
  • 91.67702
  • 90.43563
  • 88.76319
  • 88.15795
  • 87.65332
  • 83.79466
  • 80.26517
  • 76.59361
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • WBls:00000694-7 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00006739-days post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000068embryo stage
  • WBls:0000036L3-L4 lethargus Ce (C elegans)
  • WBls:0000038L4 larva Ce (C elegans)
  • WBls:0000035L3 larva Ce (C elegans)
  • WBls:0000039L4-adult lethargus Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:000007411-15 days post-L4 adult hermaphrodite (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000104life cycle
  • WBls:00000652-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:0000024L1 larva Ce (C elegans)
  • WBls:0000027L2 larva Ce (C elegans)
1.84e3
  • 1.84e3
  • 3.57e3
  • 4.90e3
  • 5.36e3
  • 5.86e3
  • 5.87e3
  • 6.43e3
  • 7.00e3
  • 7.08e3
  • 7.21e3
  • 7.22e3
  • 8.22e3
  • 8.33e3
  • 9.46e3
95.20107
  • 95.20107
  • 90.67282
  • 87.20155
  • 85.99663
  • 84.68168
  • 84.65506
  • 83.20969
  • 81.70225
  • 81.49830
  • 81.16912
  • 81.13942
  • 78.53786
  • 78.25270
  • 75.29401
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007023adult organism
  • WBls:00000685-days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000707-10 days post-L4 adult hermaphrodite Ce (C elegans)
  • WBls:00000641-day post-L4 adult hermaphrodite Ce (C elegans)
  • UBERON:0000066fully formed stage
  • WBls:000067620-days post-L4 adult hermaphrodite Ce (C elegans)
5.27e3
  • 5.27e3
  • 5.27e3
  • 5.48e3
  • 5.71e3
  • 5.82e3
86.24448
  • 86.24448
  • 86.22279
  • 85.68478
  • 85.08053
  • 84.80068
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
WBbt:0005451pharyngeal muscle cell (C elegans)
  • WBls:0000021fully-elongated embryo Ce (C elegans)
9.35e3
  • 9.35e3
75.58733
  • 75.58733
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO, SRA

Cross-references

EMBLFO080277
EnsemblWBGene00022801 (pcp-5)
Uniprot/SWISSPROTP34676, PCP5_CAEEL
WormBaseWBGene00022801

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