Ontology resources

Developmental stage ontologies logo
Developmental stage ontologies

A collection of species-specific developmental stage ontologies. The custom version of this ontology generated for Bgee and information on how to create it are available here.

Confidence Information Ontology (CIO) logo
Confidence Information Ontology (CIO)

Ontology providing confidence information about annotation assertions in a more systematic manner

Homology ontology (HOM) logo
Homology ontology (HOM)

Ontology providing annotations of similarity between anatomical structure

Uberon ontology logo
Uberon ontology

Bgee uses the cross-species ontology Uberon covering anatomical structures in animals. A custom version is generated for Bgee. Steps explaining how and why this custom version is generated are described here. We also manually modified mapping to termsfrom external ontologies.

NCBITaxon ontology logo
NCBITaxon ontology

Bgee uses the NCBITaxon ontology. A custom version is generated for Bgee. Steps explaining how and why this custom version is generated are described here.

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