This release is a beta version. Please be aware that the data will not be archived and should not yet be referenced in publications, expecting long-term retrieval. The SPARQL endpoint was not updated.
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Gene expression calls logoGene expression calls

This page provides calls of baseline presence/absence of expression, and of differential over-/under-expression, either in single species, or made comparable between multiple species. Click on a species or a group of species to browse files available for download. It is possible to download these data directly into R using our R package. See also processed expression values. All data are available under the Creative Commons Zero license (CC0).

Single-species(click on species to see more details)
H. sapiens

H. sapiens

human

M. musculus

M. musculus

mouse

D. rerio

D. rerio

zebrafish

D. melanogaster

D. melanogaster

fruit fly

C. elegans

C. elegans

nematode

C. lupus familiaris

C. lupus familiaris

dog

F. catus

F. catus

cat

E. caballus

E. caballus

horse

S. scrofa

S. scrofa

pig

B. taurus

B. taurus

cattle

C. hircus

C. hircus

Goat

O. aries

O. aries

Sheep

O. cuniculus

O. cuniculus

rabbit

C. porcellus

C. porcellus

guinea pig

G. gallus

G. gallus

chicken

M. gallopavo

M. gallopavo

Wild turkey

O. anatinus

O. anatinus

platypus

C. jacchus

C. jacchus

White-tufted-ear marmoset

C. atys

C. atys

Sooty mangabey

M. fascicularis

M. fascicularis

Crab-eating macaque

M. mulatta

M. mulatta

macaque

M. nemestrina

M. nemestrina

Pig-tailed macaque

P. anubis

P. anubis

Olive baboon

G. gorilla

G. gorilla

gorilla

P. paniscus

P. paniscus

bonobo

P. troglodytes

P. troglodytes

chimpanzee

M. murinus

M. murinus

Gray mouse lemur

C. sabaeus

C. sabaeus

Green monkey

M. javanica

M. javanica

Malayan pangolin

R. norvegicus

R. norvegicus

rat

H. glaber

H. glaber

Naked mole rat

M. domestica

M. domestica

opossum

X. laevis

X. laevis

African clawed frog

X. tropicalis

X. tropicalis

western clawed frog

A. carolinensis

A. carolinensis

green anole

L. oculatus

L. oculatus

Spotted gar

A. anguilla

A. anguilla

European freshwater eel

A. mexicanus

A. mexicanus

Blind cave fish

E. lucius

E. lucius

Northern pike

S. salar

S. salar

Atlantic salmon

G. morhua

G. morhua

Atlantic cod

P. reticulata

P. reticulata

Guppy

O. latipes

O. latipes

Japanese rice fish

A. calliptera

A. calliptera

Eastern happy

N. brichardi

N. brichardi

Fairy cichlid

S. maximus

S. maximus

Turbot

G. aculeatus

G. aculeatus

Three-spined stickleback

N. furzeri

N. furzeri

Turquoise killifish

B. lanceolatum

B. lanceolatum

Common lancelet

L. chalumnae

L. chalumnae

Coelacanth

D. pseudoobscura

D. pseudoobscura

Drosophila pseudoobscura

D. simulans

D. simulans

Drosophila simulans

Cross

Hierarchical orthologous groups

Plus
123
OMA IDGene IDGene name

This file provides groups of genes orthologous between the selected taxa.

Presence/Absence of expression

Not enough data

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Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameExpressionCall qualityExpression rank
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Gene IDGene nameAnatomical entity IDAnatomical entity nameDevelopmental stage IDDevelopmental stage nameExpressionCall qualityExpression rankIncluding observed dataAffymetrix dataAffymetrix experiment count showing expression of this gene in this condition or in sub-conditions with a high qualityAffymetrix experiment count showing expression of this gene in this condition or in sub-conditions with a low qualityAffymetrix experiment count showing absence of expression of this gene in this condition or valid parent conditions with a high qualityAffymetrix experiment count showing absence of expression of this gene in this condition or valid parent conditions with a low qualityIncluding Affymetrix observed dataEST dataEST experiment count showing expression of this gene in this condition or in sub-conditions with a high qualityEST experiment count showing expression of this gene in this condition or in sub-conditions with a low qualityIncluding EST observed dataIn situ dataIn situ hybridization experiment count showing expression of this gene in this condition or in sub-conditions with a high qualityIn situ hybridization experiment count showing expression of this gene in this condition or in sub-conditions with a low qualityIn situ hybridization experiment count showing absence of expression of this gene in this condition or valid parent conditions with a high qualityIn situ hybridization experiment count showing absence of expression of this gene in this condition or valid parent conditions with a low qualityIncluding in situ observed dataRNA-Seq dataRNA-Seq experiment count showing expression of this gene in this condition or in sub-conditions with a high qualityRNA-Seq experiment count showing expression of this gene in this condition or in sub-conditions with a low qualityRNA-Seq experiment count showing absence of expression of this gene in this condition or valid parent conditions with a high qualityRNA-Seq experiment count showing absence of expression of this gene in this condition or valid parent conditions with a low qualityIncluding RNA-Seq observed data

Over-/Under-expression

Improvement of these files is in progress

Multi-species(orthologous genes in homologous anatomical structures)

These files will be available in a future release.

Images from Wikimedia Commons. In most cases, pictures corresponds to the sequenced strains. Show information about original images.

Homo sapiens picture by Leonardo da Vinci (Life time: 1519) [Public domain]. See H. sapiens picture via Wikimedia Commons

Mus musculus picture by Rasbak [GFDL or CC-BY-SA-3.0], See M. musculus picture via Wikimedia Commons

Danio rerio picture by Azul (Own work) [see page for license], See D. rerio picture via Wikimedia Commons

Drosophila melanogaster picture by André Karwath aka Aka (Own work) [CC-BY-SA-2.5], See D. melanogaster picture via Wikimedia Commons

Caenorhabditis elegans picture by Bob Goldstein, UNC Chapel Hill http://bio.unc.edu/people/faculty/goldstein/ (Own work) [CC-BY-SA-3.0], See C. elegans picture via Wikimedia Commons

Pan troglodytes picture by Thomas Lersch (Own work) [GFDL, CC-BY-SA-3.0 or CC-BY-2.5], See P. troglodytes picture via Wikimedia Commons

Pan paniscus picture by Ltshears (Own work) [CC-BY-SA-3.0 or GFDL], See P. paniscus picture via Wikimedia Commons

Gorilla gorilla picture by Brocken Inaglory (Own work) [CC-BY-SA-3.0 or GFDL], See G. gorilla picture via Wikimedia Commons

Macaca mulatta picture by Aiwok (Own work) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See M. mulatta picture via Wikimedia Commons

Rattus norvegicus picture by Reg Mckenna (originally posted to Flickr as Wild Rat) [CC-BY-2.0], See R. norvegicus picture via Wikimedia Commons

Bos taurus picture by User Robert Merkel on en.wikipedia (US Department of Agriculture) [Public domain], See B. taurus picture via Wikimedia Commons

Sus scrofa picture by Joshua Lutz (Own work) [Public domain], See S. scrofa picture via Wikimedia Commons

Equus caballus picture by Doug Antczak Baker Institute for Animal Health College of Veterinary Medicine Cornell University [Public Domain], See E. caballus picture via Wikimedia Commons

Oryctolagus cuniculus picture by JJ Harrison (Own work) [CC-BY-SA-3.0], See O. cuniculus picture via Wikimedia Commons

Canis lupus familiaris picture by Mood210 (Own work) [CC-BY-SA-3.0], See C. lupus familiaris picture via Wikimedia Commons

Felis catus picture [CC-BY-SA-3.0], See F. catus picture via Wikimedia Commons

Cavia porcellus picture by Variraptor (Own work) [CC-BY-SA-3.0], See C. porcellus picture via Wikimedia Commons

Monodelphis domestica picture by Marsupial Genome Sheds Light on the Evolution of Immunity. Hill E, PLoS Biology Vol. 4/3/2006, e75 http://dx.doi.org/10.1371/journal.pbio.0040075 [CC-BY-2.5], See M. domestica picture via Wikimedia Commons

Ornithorhynchus anatinus picture by Dr. Philip Bethge (private) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See O. anatinus picture via Wikimedia Commons

Gallus gallus picture by Subramanya C K (Own work) [CC-BY-SA-3.0], See G. gallus picture via Wikimedia Commons

Anolis carolinensis picture by PiccoloNamek (Moved from Image:P1010027.jpg) [GFDL or CC-BY-SA-3.0], See A. carolinensis picture via Wikimedia Commons

Xenopus tropicalis picture by Václav Gvoždík (http://calphotos.berkeley.edu) [CC-BY-SA-2.5 or CC-BY-SA-3.0], See X. tropicalis picture via Wikimedia Commons

Xenopus laevis picture by Brian Gratwicke (https://www.flickr.com/photos/19731486@N07/8325732255) [CC-BY-2.0], See X. laevis picture via Wikimedia Commons

Branchiostoma lanceolatum picture by Hans Hillewaert (Own work) [CC-BY-SA-4.0], See B. lanceolatum picture via Wikimedia Commons

Latimeria chalumnae picture by Alberto Fernandez Fernandez (Own work) [GFDL, CC-BY-SA-3.0 or CC-BY-SA-2.5], See L. chalumnae picture via Wikimedia Commons

Lepisosteus oculatus picture by Brian Gratwicke (Own work) [CC-BY-2.5], See L. oculatus picture via Wikimedia Commons

Anguilla anguilla picture by GerardM (http://www.digischool.nl/bi/onderwaterbiologie/) [GFDL or CC-BY-SA-3.0], See A. anguilla picture via Wikimedia Commons

Astyanax mexicanus picture by H. Zell (Own work) [GFDL or CC-BY-SA-3.0], See A. mexicanus picture via Wikimedia Commons

Esox lucius picture by Jik jik (Own work) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See E. lucius picture via Wikimedia Commons

Salmo salar picture by Hans-Petter Fjeld (Own work) [CC-BY-SA-2.5], See S. salar picture via Wikimedia Commons

Gadus morhua picture by Hans-Petter Fjeld (Own work) [CC-BY-SA-2.5], See G. morhua picture via Wikimedia Commons

Poecilia reticulata picture by Per Harald Olsen (Own work) [GFDL or CC-BY-3.0], See P. reticulata picture via Wikimedia Commons

Oryzias latipes picture by NOZO (Own work) [GFDL or CC-BY-3.0], See O. latipes picture via Wikimedia Commons

Astatotilapia calliptera picture by Alexandra Tyers (https://www.flickr.com/photos/52993488@N03/5441877789) [CC-BY-SA-2.0], See A. calliptera picture via Wikimedia Commons

Meleagris gallopavo picture by Riki7 (Own work) [Public domain], See M. gallopavo picture via Wikimedia Commons

Callithrix jacchus picture by Leszek Leszczynski (https://www.flickr.com/photos/leszekleszczynski/6952548339/) [CC-BY-2.0], See C. jacchus picture via Wikimedia Commons

Cercocebus atys picture by Giulio Russo Photography (Own work) [CC-BY-4.0], See C. atys picture via Wikimedia Commons

Macaca fascicularis picture by André Ueberbach (Eigene Aufnahme von André Ueberbach/Own production) [CC-BY-SA-2.0 DE], See M. fascicularis picture via Wikimedia Commons

Macaca nemestrina picture by Hectonichus (Own work) [CC-BY-SA-3.0 or GFDL], See M. nemestrina picture via Wikimedia Commons

Papio anubis picture by Charles J. Sharp (Own work, from Sharp Photography, http://www.sharpphotography.co.uk/) [CC-BY-SA-4.0], See P. anubis picture via Wikimedia Commons

Capra hircus picture by flagstaffotos [at] gmail.com (Own work) [GFDL], See C. hircus picture via Wikimedia Commons

Ovis aries picture by Jacquie Wingate from Recovery, USA (https://www.flickr.com/photos/11948828@N00/2212889583/) [CC-BY-SA-1.0], See O. aries picture via Wikimedia Commons

Manis javanica picture by Frendi Apen Irawan (Own work) [CC-BY-SA-4.0], See M. javanica picture via Wikimedia Commons

Heterocephalus glaber picture by Roman Klementschitz, Wien (Own work) [GFDL or CC-BY-SA-3.0], See H. glaber picture via Wikimedia Commons

Microcebus murinus picture by Charles J. Sharp (Own work, from Sharp Photography, http://www.sharpphotography.co.uk/) [CC-BY-SA-3.0], See M. murinus picture via Wikimedia Commons

Neolamprologus brichardi picture by David Midgley (www.sydneycichlid.com) (Own work) [CC-BY-SA-2.5], See N. brichardi picture via Wikimedia Commons

Scophthalmus maximus picture by Luc Viatour (Own work http://www.lucnix.be/) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See S. maximus picture via Wikimedia Commons

Chlorocebus sabaeus picture by Charles J. Sharp (Own work, from Sharp Photography, http://www.sharpphotography.co.uk/) [CC-BY-SA-4.0], See C. sabaeus picture via Wikimedia Commons

Gasterosteus aculeatus picture by Viridiflavus (Own work) [GFDL or CC-BY-SA-3.0], See G. aculeatus picture via Wikimedia Commons

Nothobranchius furzeri picture by Ugau (Own work, Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI), Jena, Germany) [GFDL or CC-BY-SA-3.0], See N. furzeri picture via Wikimedia Commons

Drosophila pseudoobscura picture, See D. pseudoobscura picture via Ensembl Metazoa

Drosophila simulans picture by Nicolas Gompel [CC BY-NC-SA 2.0 FR], See D. simulans picture via Nicolas Gompel's lab website

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