This release is a beta version. Please be aware that the data will not be archived and should not yet be referenced in publications, expecting long-term retrieval. The SPARQL endpoint was not updated.
More result(s)
More result(s)

Processed expression values logoProcessed expression values

This page provides annotations and experiment information (e.g., annotations to anatomy, development, sex and strain, quality scores used in QCs, chip or library information), and processed expression values (e.g., read counts, TPM and FPKM values, log values of Affymetrix probeset normalized signal intensities). Click on a species to browse files available for download. It is possible to download these data directly into R using our R package. See also gene expression calls. All data are available under the Creative Commons Zero license (CC0).

Species with data in Bgee(click on species to see more details)
H. sapiensProcessed expression values

H. sapiens


M. musculusProcessed expression values

M. musculus


D. rerioProcessed expression values

D. rerio


D. melanogasterProcessed expression values

D. melanogaster

fruit fly

C. elegansProcessed expression values

C. elegans


C. lupus familiarisProcessed expression values

C. lupus familiaris


F. catusProcessed expression values

F. catus


E. caballusProcessed expression values

E. caballus


S. scrofaProcessed expression values

S. scrofa


B. taurusProcessed expression values

B. taurus


C. hircusProcessed expression values

C. hircus


O. ariesProcessed expression values

O. aries


O. cuniculusProcessed expression values

O. cuniculus


C. porcellusProcessed expression values

C. porcellus

guinea pig

G. gallusProcessed expression values

G. gallus


M. gallopavoProcessed expression values

M. gallopavo

Wild turkey

O. anatinusProcessed expression values

O. anatinus


C. jacchusProcessed expression values

C. jacchus

White-tufted-ear marmoset

C. atysProcessed expression values

C. atys

Sooty mangabey

M. fascicularisProcessed expression values

M. fascicularis

Crab-eating macaque

M. mulattaProcessed expression values

M. mulatta


M. nemestrinaProcessed expression values

M. nemestrina

Pig-tailed macaque

P. anubisProcessed expression values

P. anubis

Olive baboon

G. gorillaProcessed expression values

G. gorilla


P. paniscusProcessed expression values

P. paniscus


P. troglodytesProcessed expression values

P. troglodytes


M. murinusProcessed expression values

M. murinus

Gray mouse lemur

C. sabaeusProcessed expression values

C. sabaeus

Green monkey

M. javanicaProcessed expression values

M. javanica

Malayan pangolin

R. norvegicusProcessed expression values

R. norvegicus


H. glaberProcessed expression values

H. glaber

Naked mole rat

M. domesticaProcessed expression values

M. domestica


X. laevisProcessed expression values

X. laevis

African clawed frog

X. tropicalisProcessed expression values

X. tropicalis

western clawed frog

A. carolinensisProcessed expression values

A. carolinensis

green anole

L. oculatusProcessed expression values

L. oculatus

Spotted gar

A. anguillaProcessed expression values

A. anguilla

European freshwater eel

A. mexicanusProcessed expression values

A. mexicanus

Blind cave fish

E. luciusProcessed expression values

E. lucius

Northern pike

S. salarProcessed expression values

S. salar

Atlantic salmon

G. morhuaProcessed expression values

G. morhua

Atlantic cod

P. reticulataProcessed expression values

P. reticulata


O. latipesProcessed expression values

O. latipes

Japanese rice fish

A. callipteraProcessed expression values

A. calliptera

Eastern happy

N. brichardiProcessed expression values

N. brichardi

Fairy cichlid

S. maximusProcessed expression values

S. maximus


G. aculeatusProcessed expression values

G. aculeatus

Three-spined stickleback

N. furzeriProcessed expression values

N. furzeri

Turquoise killifish

B. lanceolatumProcessed expression values

B. lanceolatum

Common lancelet

L. chalumnaeProcessed expression values

L. chalumnae


D. pseudoobscuraProcessed expression values

D. pseudoobscura

Drosophila pseudoobscura

D. simulansProcessed expression values

D. simulans

Drosophila simulans


RNA-Seq data

No data

Files can also be retrieved per experiment, see RNA-Seq data directory.

Affymetrix data

No data

Files can also be retrieved per experiment, see Affymetrix data directory.

Single cell full length RNA-Seq data

No data

Files can also be retrieved per experiment, see Full length single cell RNA-Seq data directory.

Images from Wikimedia Commons. In most cases, pictures corresponds to the sequenced strains. Show information about original images.

Homo sapiens picture by Leonardo da Vinci (Life time: 1519) [Public domain]. See H. sapiens picture via Wikimedia Commons

Mus musculus picture by Rasbak [GFDL or CC-BY-SA-3.0], See M. musculus picture via Wikimedia Commons

Danio rerio picture by Azul (Own work) [see page for license], See D. rerio picture via Wikimedia Commons

Drosophila melanogaster picture by André Karwath aka Aka (Own work) [CC-BY-SA-2.5], See D. melanogaster picture via Wikimedia Commons

Caenorhabditis elegans picture by Bob Goldstein, UNC Chapel Hill (Own work) [CC-BY-SA-3.0], See C. elegans picture via Wikimedia Commons

Pan troglodytes picture by Thomas Lersch (Own work) [GFDL, CC-BY-SA-3.0 or CC-BY-2.5], See P. troglodytes picture via Wikimedia Commons

Pan paniscus picture by Ltshears (Own work) [CC-BY-SA-3.0 or GFDL], See P. paniscus picture via Wikimedia Commons

Gorilla gorilla picture by Brocken Inaglory (Own work) [CC-BY-SA-3.0 or GFDL], See G. gorilla picture via Wikimedia Commons

Macaca mulatta picture by Aiwok (Own work) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See M. mulatta picture via Wikimedia Commons

Rattus norvegicus picture by Reg Mckenna (originally posted to Flickr as Wild Rat) [CC-BY-2.0], See R. norvegicus picture via Wikimedia Commons

Bos taurus picture by User Robert Merkel on en.wikipedia (US Department of Agriculture) [Public domain], See B. taurus picture via Wikimedia Commons

Sus scrofa picture by Joshua Lutz (Own work) [Public domain], See S. scrofa picture via Wikimedia Commons

Equus caballus picture by Doug Antczak Baker Institute for Animal Health College of Veterinary Medicine Cornell University [Public Domain], See E. caballus picture via Wikimedia Commons

Oryctolagus cuniculus picture by JJ Harrison (Own work) [CC-BY-SA-3.0], See O. cuniculus picture via Wikimedia Commons

Canis lupus familiaris picture by Mood210 (Own work) [CC-BY-SA-3.0], See C. lupus familiaris picture via Wikimedia Commons

Felis catus picture [CC-BY-SA-3.0], See F. catus picture via Wikimedia Commons

Cavia porcellus picture by Variraptor (Own work) [CC-BY-SA-3.0], See C. porcellus picture via Wikimedia Commons

Monodelphis domestica picture by Marsupial Genome Sheds Light on the Evolution of Immunity. Hill E, PLoS Biology Vol. 4/3/2006, e75 [CC-BY-2.5], See M. domestica picture via Wikimedia Commons

Ornithorhynchus anatinus picture by Dr. Philip Bethge (private) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See O. anatinus picture via Wikimedia Commons

Gallus gallus picture by Subramanya C K (Own work) [CC-BY-SA-3.0], See G. gallus picture via Wikimedia Commons

Anolis carolinensis picture by PiccoloNamek (Moved from Image:P1010027.jpg) [GFDL or CC-BY-SA-3.0], See A. carolinensis picture via Wikimedia Commons

Xenopus tropicalis picture by Václav Gvoždík ( [CC-BY-SA-2.5 or CC-BY-SA-3.0], See X. tropicalis picture via Wikimedia Commons

Xenopus laevis picture by Brian Gratwicke ( [CC-BY-2.0], See X. laevis picture via Wikimedia Commons

Branchiostoma lanceolatum picture by Hans Hillewaert (Own work) [CC-BY-SA-4.0], See B. lanceolatum picture via Wikimedia Commons

Latimeria chalumnae picture by Alberto Fernandez Fernandez (Own work) [GFDL, CC-BY-SA-3.0 or CC-BY-SA-2.5], See L. chalumnae picture via Wikimedia Commons

Lepisosteus oculatus picture by Brian Gratwicke (Own work) [CC-BY-2.5], See L. oculatus picture via Wikimedia Commons

Anguilla anguilla picture by GerardM ( [GFDL or CC-BY-SA-3.0], See A. anguilla picture via Wikimedia Commons

Astyanax mexicanus picture by H. Zell (Own work) [GFDL or CC-BY-SA-3.0], See A. mexicanus picture via Wikimedia Commons

Esox lucius picture by Jik jik (Own work) [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See E. lucius picture via Wikimedia Commons

Salmo salar picture by Hans-Petter Fjeld (Own work) [CC-BY-SA-2.5], See S. salar picture via Wikimedia Commons

Gadus morhua picture by Hans-Petter Fjeld (Own work) [CC-BY-SA-2.5], See G. morhua picture via Wikimedia Commons

Poecilia reticulata picture by Per Harald Olsen (Own work) [GFDL or CC-BY-3.0], See P. reticulata picture via Wikimedia Commons

Oryzias latipes picture by NOZO (Own work) [GFDL or CC-BY-3.0], See O. latipes picture via Wikimedia Commons

Astatotilapia calliptera picture by Alexandra Tyers ( [CC-BY-SA-2.0], See A. calliptera picture via Wikimedia Commons

Meleagris gallopavo picture by Riki7 (Own work) [Public domain], See M. gallopavo picture via Wikimedia Commons

Callithrix jacchus picture by Leszek Leszczynski ( [CC-BY-2.0], See C. jacchus picture via Wikimedia Commons

Cercocebus atys picture by Giulio Russo Photography (Own work) [CC-BY-4.0], See C. atys picture via Wikimedia Commons

Macaca fascicularis picture by André Ueberbach (Eigene Aufnahme von André Ueberbach/Own production) [CC-BY-SA-2.0 DE], See M. fascicularis picture via Wikimedia Commons

Macaca nemestrina picture by Hectonichus (Own work) [CC-BY-SA-3.0 or GFDL], See M. nemestrina picture via Wikimedia Commons

Papio anubis picture by Charles J. Sharp (Own work, from Sharp Photography, [CC-BY-SA-4.0], See P. anubis picture via Wikimedia Commons

Capra hircus picture by flagstaffotos [at] (Own work) [GFDL], See C. hircus picture via Wikimedia Commons

Ovis aries picture by Jacquie Wingate from Recovery, USA ( [CC-BY-SA-1.0], See O. aries picture via Wikimedia Commons

Manis javanica picture by Frendi Apen Irawan (Own work) [CC-BY-SA-4.0], See M. javanica picture via Wikimedia Commons

Heterocephalus glaber picture by Roman Klementschitz, Wien (Own work) [GFDL or CC-BY-SA-3.0], See H. glaber picture via Wikimedia Commons

Microcebus murinus picture by Charles J. Sharp (Own work, from Sharp Photography, [CC-BY-SA-3.0], See M. murinus picture via Wikimedia Commons

Neolamprologus brichardi picture by David Midgley ( (Own work) [CC-BY-SA-2.5], See N. brichardi picture via Wikimedia Commons

Scophthalmus maximus picture by Luc Viatour (Own work [GFDL or CC-BY-SA-3.0-2.5-2.0-1.0], See S. maximus picture via Wikimedia Commons

Chlorocebus sabaeus picture by Charles J. Sharp (Own work, from Sharp Photography, [CC-BY-SA-4.0], See C. sabaeus picture via Wikimedia Commons

Gasterosteus aculeatus picture by Viridiflavus (Own work) [GFDL or CC-BY-SA-3.0], See G. aculeatus picture via Wikimedia Commons

Nothobranchius furzeri picture by Ugau (Own work, Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI), Jena, Germany) [GFDL or CC-BY-SA-3.0], See N. furzeri picture via Wikimedia Commons

Drosophila pseudoobscura picture, See D. pseudoobscura picture via Ensembl Metazoa

Drosophila simulans picture by Nicolas Gompel [CC BY-NC-SA 2.0 FR], See D. simulans picture via Nicolas Gompel's lab website

Do not show this banner again