This release is a beta version. Please be aware that the data will not be archived and should not yet be referenced in publications, expecting long-term retrieval. The SPARQL endpoint was not updated.

Ontology resources

Developmental stage ontologies logo
Developmental stage ontologies

A collection of species-specific developmental stage ontologies. The custom version of this ontology generated for Bgee and information on how to create it are available on GitHub.

Confidence Information Ontology (CIO) logo
Confidence Information Ontology (CIO)

Ontology providing confidence information about annotation assertions in a systematic manner

Homology ontology (HOM) logo
Homology ontology (HOM)

Ontology describing homology-related concepts, notably used in our annotations of similarity between anatomical structures.

Uberon ontology logo
Uberon ontology

Bgee uses the cross-species ontology Uberon covering anatomical structures in animals. A custom version is generated for Bgee. Steps explaining how and why this custom version is generated are described on GitHub. We also manually modified mapping to terms from external ontologies.

NCBITaxon ontology logo
NCBITaxon ontology

Bgee uses the NCBITaxon ontology. A custom version is generated for Bgee. Steps explaining how and why this custom version is generated are described on GitHub.

Do not show this banner again