This release is a beta version. Please be aware that the data will not be archived and should not yet be referenced in publications, expecting long-term retrieval. The SPARQL endpoint was not updated.
Well documented source code of the Bgee pipeline used to generate databases and download files.
Retrieve annotations, quantitative data and expression calls produced by the Bgee pipeline. Run GO-like enrichment analyses based on anatomical terms, where genes are mapped to anatomical terms by expression patterns.
Generate present/absent gene expression calls for your own RNA-Seq libraries as long as the species are present in Bgee. BgeeCall uses reference intergenic regions to define a threshold of presence of expression specific to your RNA-Seq library.
A method for Affymetrix microarray quality control which outperforms other methods in identification of poor quality arrays in datasets composed of arrays from many independent experiments.