Data sources

This page provides information about the data sources used in Bgee 14.0.

Genomics databases

Description
Source for gene annotations, mappings to the Gene Ontology, mappings to Affymetrix probeset IDs, and cross-references to other databases
Last import
2016-03-18 (release 84)
Description
Source for miRNA families
Last import
2014-06-23 (release 21)
Description
Source of gene orthology information
Last import
2017-08-21

RNA-Seq data sources

Description
RNA-Seq data source for various species
Last import
2016-04-01
Description
GTEx RNA-Seq data
Last import
2015-10-03 (release 6.p1)
Description
RNA-Seq data source for various species
Last import
2016-04-01

Affymetrix data sources

Description
Affymetrix data source for various species
Last import
2016-08-22
Description
Affymetrix data source for various species
Last import
2016-08-22

In situ data sources

Description
Drosophila in situ data source
Last import
2016-12-04
Description
Drosophila in situ data source
Last import
2016-12-06
Description
Mouse in situ data source
Last import
2016-12-05
Description
WormBase - Nematode Information Resource
Last import
2016-08-29
Description
Xenopus in situ data source
Last import
2016-11-15
Description
Zebrafish in situ data source
Last import
2017-03-27

EST data sources

Description
EST data for miRNAs
Last import
2009-04-23 (release 2)
Description
EST data source for various species
Last import
2016-12-05

Ontologies

Description
Confidence Information Ontology
Last import
2015-03-10
Description
Collection of developmental and life stage ontologies in animals. Integrated into Uberon.
Last import
2016-12-08
Description
Filtered Gene Ontology
Last import
2016-04-30
Description
Integrated cross-species ontology covering anatomical structures in animals. Use of the subset "composite-metazoan".
Last import
2016-07-14

Other sources

Description
Define evolutionary relations between anatomical entities described in the Uberon ontology
Last import
2016-07-14
Description
Source for gene annotations, mappings to the Gene Ontology, mappings to Affymetrix probeset IDs, and cross-references to other databases
Last import
2016-03-18 (release 30)
Description
Source taxonomy used in Bgee
Last import
2016-07-20

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