Data sources

This page provides information about the data sources used in Bgee 15.2.

Genomics databases

DESCRIPTION

Source for gene annotations, mappings to the Gene Ontology, mappings to Affymetrix probeset IDs, and cross-references to other databases

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2020-12-01 (release 102)

DESCRIPTION

Source for miRNA families

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2018-11-03 (release 22.1)

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Source for gene annotations, mappings to the Gene Ontology, mappings to Affymetrix probeset IDs, and cross-references to other databases

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2020-12-01 (release 49)

DESCRIPTION

Source of gene orthology information

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2020-08-21

DESCRIPTION

Source for genome assembly and annotations

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2020-12-01

DESCRIPTION

Source for the European amphioxus annotations

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2021-07-15

scRNA-Seq data sources

DESCRIPTION

Single-cell RNA-Seq data source for various species

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2023-04-04

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Single-cell RNA-Seq data source for various species

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RNA-Seq data sources

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RNA-Seq data source for various species

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2023-04-04

DESCRIPTION

GTEx RNA-Seq data

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2015-10-03 (release 6.p1)

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RNA-Seq data source for various species

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RNA-Seq data source for various species

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RNA-Seq data source for various species

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DESCRIPTION

RNA-Seq data source for various species

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2021-02-08

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RNA-Seq data source for various species

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2021-02-08

Affymetrix data sources

DESCRIPTION

Affymetrix data source for various species

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2016-08-21

DESCRIPTION

Affymetrix data source for various species

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2016-08-22

In situ data sources

DESCRIPTION

Zebrafish in situ data source

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2021-03-02

DESCRIPTION

Mouse in situ data source

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2021-03-02

DESCRIPTION

Drosophila in situ data source

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2021-03-02

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Drosophila in situ data source

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2020-11-22

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Xenopus in situ data source

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2021-03-11

DESCRIPTION

WormBase - Nematode Information Resource

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2020-12-13

EST data sources

DESCRIPTION

EST data source for various species

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2016-12-05

DESCRIPTION

EST data for miRNAs

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2009-04-23 (release 2)

Ontologies

DESCRIPTION

Filtered Gene Ontology

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2021-02-08

DESCRIPTION

Integrated cross-species ontology covering anatomical structures in animals. Use of the subset "composite-metazoan".

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2020-09-16

DESCRIPTION

Collection of developmental and life stage ontologies in animals. Integrated into Uberon.

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2021-03-01

DESCRIPTION

Confidence Information Ontology

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2015-03-10

Other sources

DESCRIPTION

Source taxonomy used in Bgee

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2020-12-14

DESCRIPTION

Define evolutionary relations between anatomical entities described in the Uberon ontology

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2016-07-14