Whole transcriptome identification of turtle

Experiment ID:DRP000595
Technology:RNA-Seq
Description:Whole transcriptome of turtle (Pelodiscus sinensis) was identified in this study by using stranded sequencing methods.
Source:DRP000595 SRA
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Bulk RNA-Seq processed expression values in Gallus gallus

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Showing 1 to 16 of 16 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX001555UBERON:0000922 embryoembryo without amniotic membraneUBERON:0000068 embryo stageprimitive streak stageNANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single2021236114301873001633217236.5Browse results
DRX001556UBERON:0000922 embryoembryo without amniotic membraneUBERON:0000068 embryo stageprimitive streak stageNANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single2093057314878212001634817244Browse results
DRX001557UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000062 Hamburger Hamilton stages 6 (chicken)HH6NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3189580222270507001658017393Browse results
DRX001558UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000062 Hamburger Hamilton stages 6 (chicken)HH6NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single2044678713833897001639717276.5Browse results
DRX001559UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000021 Hamburger Hamilton stage 11 (chicken)HH11NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3213822121251467001675317483Browse results
DRX001560UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000021 Hamburger Hamilton stage 11 (chicken)HH11NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single1969778713437330001653417364.5Browse results
DRX001561UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000025 Hamburger Hamilton stage 14 (chicken)HH14NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3273599822044909001673417453Browse results
DRX001562UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000025 Hamburger Hamilton stage 14 (chicken)HH14NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3102665421030816001666517400Browse results
DRX001563UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000028 Hamburger Hamilton stage 16 (chicken)HH16NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3256836020918042001667217409Browse results
DRX001564UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000028 Hamburger Hamilton stage 16 (chicken)HH16NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3146829220371207001666017404.5Browse results
DRX001565UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000031 Hamburger Hamilton stage 19 (chicken)HH19NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3109496318740839001684817517.5Browse results
DRX001566UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000031 Hamburger Hamilton stage 19 (chicken)HH19NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3129546020130842001668717432Browse results
DRX001567UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000042 Hamburger Hamilton stage 28 (chicken)HH28NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single2201394414237593001680817520.5Browse results
DRX001568UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000042 Hamburger Hamilton stage 28 (chicken)HH28NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single2150646913757017001679617515Browse results
DRX001569UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000052 Hamburger Hamilton stage 38 (chicken)HH38NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3172699519486891001712817691.5Browse results
DRX001570UBERON:0000922 embryoembryo without amniotic membraneGgalDv:0000052 Hamburger Hamilton stage 38 (chicken)HH38NANANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3101209319042552001714717712Browse results

Showing 1 to 16 of 16 entries

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