Transcriptome analysis of Tanzanian coelacanth Latimeria chalumnae

Experiment ID:DRP000627
Technology:RNA-Seq
Description:Transcriptome analysis of Tanzanian coelacanth Latimeria chalumnae
Source:DRP000627 SRA

List of assays

Show

entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX001719UBERON:0000080 mesonephrosKidneyUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina HiSeq 2000FULL_LENGTH202paired241160283172668043001273213037Browse results
DRX001720UBERON:0000152 pelvic finpelvic finUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired241950423162319710001259312901Browse results
DRX001721UBERON:0000151 pectoral finpectoral finUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired210570603130884775001291013143Browse results
DRX001722UBERON:0001042 chordate pharynxpharynxUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired300240978196367352001319813489Browse results
DRX001723UBERON:0000206 pharyngeal gillgillUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina HiSeq 2000FULL_LENGTH202paired291630774176060644001307213276.5Browse results
DRX001724UBERON:0003665 post-anal tail muscletail muscleUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired588752991345012876001340813623.5Browse results
DRX001725UBERON:0000080 mesonephrosKidneyUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH108paired3327904517282169001275413178Browse results
DRX001726UBERON:0000152 pelvic finpelvic finUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH108paired4208863317095100001273413091.5Browse results
DRX001727UBERON:0000151 pectoral finpectoral finUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH108paired4390353519923756001277713131Browse results
DRX001728UBERON:0001042 chordate pharynxpharynxUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH108paired2993352017688674001237112910.5Browse results
DRX001729UBERON:0000206 pharyngeal gillgillUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH108paired3976674918638502001288513299.5Browse results
DRX001730UBERON:0003665 post-anal tail muscletail muscleUBERON:0000104 life cycleNANANANANALatimeria chalumnaeNAIlluminaIllumina Genome Analyzer IIxFULL_LENGTH108paired3167722316154539001236312917Browse results