Transcriptome analyses of the chimpanzee tissues

Experiment ID:DRP003657
Technology:RNA-Seq
Description:In mammals, more than 60% of the genome is use for transcription for mRNAs and noncoding RNAs (ncRNAs). For the comprehensive transcriptome analysis, we perform directional RNA sequencing of the chimpanzee cerebral cortex and heart.
Source:DRP003657 SRA
Download:
Bulk RNA-Seq processed expression values in Pan troglodytes

List of assays

Show

entries

Showing 1 to 6 of 6 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX028557UBERON:0000956 cerebral cortexcerebral cortexUBERON:0000104 life cycleNANANANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH76single150132652104107223002073122605.5Browse results
DRX028558UBERON:0000956 cerebral cortexcerebral cortexUBERON:0000104 life cycleNANANANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH50single198660786132654752002073422521Browse results
DRX028559UBERON:0000948 heartheartUBERON:0000104 life cycleNANANANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH50single182261526137075440001840421319.5Browse results
DRX028560UBERON:0000948 heartheartUBERON:0000104 life cycleNANANANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH50single172682050129809528001834121268Browse results
DRX028561UBERON:0000948 heartheartUBERON:0000104 life cycleNANANANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH50single153616605111254786001945121894.5Browse results
DRX028562UBERON:0000948 heartheartUBERON:0000104 life cycleNANANANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH50single172129601124464333001940421850Browse results

Showing 1 to 6 of 6 entries

This website requires cookies, and limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our privacy notice.
Do not show this banner again