Medaka embryonic RNAseq

Experiment ID:DRP003809
Technology:RNA-Seq
Description:To uncover whole embryonic gene expression profiles of Medaka (O. latipes), RNAseq using Illumina paired-end library was sequenced.
Source:DRP003809 SRA
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Bulk RNA-Seq processed expression values in Oryzias latipes

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Showing 1 to 20 of 58 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX072389UBERON:0007023 adult organismwhole embryoUBERON:0000113 post-juvenileadultfemaleHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired4089307633338468002243923082.5Browse results
DRX072390UBERON:0007023 adult organismwhole embryoUBERON:0000113 post-juvenileadultfemaleHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3498289028310285002237423061Browse results
DRX072391UBERON:0007023 adult organismwhole embryoUBERON:0000113 post-juvenileadultfemaleHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3319794427232619002237423070.5Browse results
DRX072392UBERON:0007023 adult organismwhole embryoUBERON:0000113 post-juvenileadultmaleHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3359440027672455002264023200.5Browse results
DRX072393UBERON:0007023 adult organismwhole embryoUBERON:0000113 post-juvenileadultmaleHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired4054587132846560002274223262.5Browse results
DRX072394UBERON:0007023 adult organismwhole embryoUBERON:0000113 post-juvenileadultmaleHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3658525729599772002265423212Browse results
DRX072395UBERON:0000922 embryowhole embryoUBERON:0007232 2 cell stageStage 3mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3022953626632764001804020835Browse results
DRX072396UBERON:0000922 embryowhole embryoUBERON:0007232 2 cell stageStage 3mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3603151631654061001829920957Browse results
DRX072397UBERON:0000922 embryowhole embryoUBERON:0007232 2 cell stageStage 3mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3180392128189179001805720843Browse results
DRX072398UBERON:0000922 embryowhole embryoUBERON:0007236 8 cell stageStage 5mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired4032544935211588001950121595Browse results
DRX072399UBERON:0000922 embryowhole embryoUBERON:0007236 8 cell stageStage 5mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3371224429234783002025721994Browse results
DRX072400UBERON:0000922 embryowhole embryoUBERON:0007236 8 cell stageStage 5mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3374958229738821001842921015.5Browse results
DRX072401UBERON:0000922 embryowhole embryoUBERON:0007236 8 cell stageStage 5mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3125841927586116001830920967.5Browse results
DRX072402UBERON:0000922 embryowhole embryoUBERON:0000107 cleavage stageStage 7mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3170715027865105001803420815Browse results
DRX072403UBERON:0000922 embryowhole embryoUBERON:0000107 cleavage stageStage 7mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3306610029222283001842221016.5Browse results
DRX072404UBERON:0000922 embryowhole embryoUBERON:0000107 cleavage stageStage 7mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3073926027210435001847921043Browse results
DRX072405UBERON:0000922 embryowhole embryoUBERON:0000109 gastrula stageStage 14mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3440579328300015002075522261.5Browse results
DRX072406UBERON:0000922 embryowhole embryoUBERON:0000109 gastrula stageStage 14mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3493357129002615002106822422Browse results
DRX072407UBERON:0000922 embryowhole embryoUBERON:0000109 gastrula stageStage 14mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3366570227793988002104122395Browse results
DRX072408UBERON:0000922 embryowhole embryoUBERON:0000109 gastrula stageStage 15mixedHd-rRNANAOryzias latipesNAIlluminaIllumina HiSeq 4000FULL_LENGTH100paired3480968528784877002062322176.5Browse results

Showing 1 to 20 of 58 entries

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