RNA-seq of achilles tendon from young and old donors to study age-related changes in tendon

Experiment ID:E-MTAB-2449
Technology:RNA-Seq
Description:Tendon from young and old donors was used for RNA-Seq analysis. The aim of the study was to identify differentially expressed tendon transcripts in ageing in order to to characterize molecular mechanisms associated with age-related changes in tendon.
Source:E-MTAB-2449 ArrayExpress

List of assays

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entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX446079UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000168 74-year-old stage (human)74 years, old3mixedNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired2365636413201984002593034159Browse results
ERX446080UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000108 14-year-old stage (human)14 years, young4maleNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4560468328839841002739035326.5Browse results
ERX446081UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000110 16-year-old stage (human)16 years, young2maleNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired3750388220524525002853436488Browse results
ERX446082UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000173 79-year-old stage (human)79 years, old5mixedNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired2809510414422084002717235224.5Browse results
ERX446083UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000154 60-year-old stage (human)60 years, old4mixedNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired3117072818982192002901936725.5Browse results
ERX446084UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000160 66-year-old stage (human)66 years, old1mixedNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired3343123518109124002943136944.5Browse results
ERX446085UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000115 21-year-old stage (human)21 years, young1maleNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired3117879618465862002910936808Browse results
ERX446086UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000121 27-year-old stage (human)27 years, young3maleNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired3090757416368657002522433540Browse results
ERX446087UBERON:0003701 calcaneal tendonachilles tendonHsapDv:0000162 68-year-old stage (human)68 years, old2mixedNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired3180860517520562002921236944Browse results