Muscle RNA-seq expression variation

Experiment ID:ERP001954
Technology:RNA-Seq
Description:Muscle RNA-seq of 89 porcine individuals from a single founder family
Source:ERP001954 SRA

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entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX167051UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single43992632562873001491219128.5Browse results
ERX167052UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single96009236418261001695920225Browse results
ERX167053UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single100577227099143001619419749.5Browse results
ERX167054UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single56235773930331001568819574.5Browse results
ERX167055UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single127865738511798001705720271.5Browse results
ERX167056UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single125416828729464001675420095Browse results
ERX167057UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single60600583412186001772120347Browse results
ERX167058UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single98372916571548001638319876Browse results
ERX167060UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single83598385990046001613919751.5Browse results
ERX167061UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single123945098902243001655419974.5Browse results
ERX167062UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single82947715785860001625919803Browse results
ERX167063UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single55602793879249001456018966.5Browse results
ERX167064UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single41449102204322001423618734.5Browse results
ERX167065UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single124120667938301001727420360Browse results
ERX167066UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single41111812880740001578419539.5Browse results
ERX167067UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single65885934049856001479219042Browse results
ERX167068UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single48213093272318001436318800Browse results
ERX167071UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single43360542398645001421818731Browse results
ERX167072UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single109018357347124001658420009Browse results
ERX167073UBERON:0001401 longissimus thoracis musclelongissimus dorsiUBERON:0000104 life cycleNANANANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH36single95942786138807001642519868Browse results