Phermone_detection_in_the_main_olfactory_system

Experiment ID:ERP002178
Technology:RNA-Seq
Description:Here I propose to identify transcriptional differences, by RNA sequencing using the Illumina platform, between the main olfactory epithelium from male and female mice. The transcriptome will be sequenced from 3 adult male and 3 adult female mice, and analyzed for both transcript abundance and sex-specific isoforms. The analysis will be primarily focused on the sensory receptors and molecular transduction machinery implicated in pheromone detection.
Source:ERP002178 SRA
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Bulk RNA-Seq processed expression values in Mus musculus

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX200568UBERON:0001997 olfactory epitheliumolfactory epitheliumMmusDv:0000154 8-week-old stage (mouse)8 weeks oldmaleC57BL/6JNANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH75paired4591967542386764002600833797.5Browse results
ERX200569UBERON:0001997 olfactory epitheliumolfactory epitheliumUBERON:0018241 prime adult stage8 to 10 weeks oldfemaleC57BL/6JNANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH75paired5398504450352743002598333862.5Browse results
ERX200570UBERON:0001997 olfactory epitheliumolfactory epitheliumMmusDv:0000154 8-week-old stage (mouse)8 weeks oldmaleC57BL/6JNANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH75paired4543695842774768002494133099Browse results
ERX200571UBERON:0001997 olfactory epitheliumolfactory epitheliumUBERON:0018241 prime adult stage8 to 10 weeks oldfemaleC57BL/6JNANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH75paired4454865942265690002459332711Browse results
ERX200572UBERON:0001997 olfactory epitheliumolfactory epitheliumMmusDv:0000154 8-week-old stage (mouse)8 weeks oldmaleC57BL/6JNANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH75paired4744937843645862002567733596.5Browse results
ERX200573UBERON:0001997 olfactory epitheliumolfactory epitheliumUBERON:0018241 prime adult stage8 to 10 weeks oldfemaleC57BL/6JNANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH75paired4109616938052867002559133637Browse results

Showing 1 to 6 of 6 entries

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