BovRNA-Seq

Experiment ID:ERP002220
Technology:RNA-Seq
Description:SNP discovery in bovine muscle: the aim of the project was to used a transcriptomic-based approach to identify coding SNPs
Source:ERP002220 SRA
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Bulk RNA-Seq processed expression values in Bos taurus

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Showing 1 to 6 of 6 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX202566UBERON:0001401 longissimus thoracis musclelongissimus thoracisUBERON:0000112 sexually immature stage16 monthsmaleLimousinNANABos taurusNAIlluminaIllumina HiSeq 2000FULL_LENGTH101single3612598127780770001649419713.5Browse results
ERX202567UBERON:0001401 longissimus thoracis musclelongissimus thoracisUBERON:0000112 sexually immature stage16 monthsmaleLimousinNANABos taurusNAIlluminaIllumina HiSeq 2000FULL_LENGTH101single4533943534368205001676419867.5Browse results
ERX202568UBERON:0001401 longissimus thoracis musclelongissimus thoracisUBERON:0000112 sexually immature stage16 monthsmaleLimousinNANABos taurusNAIlluminaIllumina HiSeq 2000FULL_LENGTH101single4317638032885411001661919765.5Browse results
ERX202569UBERON:0001401 longissimus thoracis musclelongissimus thoracisUBERON:0000112 sexually immature stage16 monthsmaleLimousinNANABos taurusNAIlluminaIllumina HiSeq 2000FULL_LENGTH101single4317638033535366001656419747.5Browse results
ERX202570UBERON:0001401 longissimus thoracis musclelongissimus thoracisUBERON:0000112 sexually immature stage16 monthsmaleLimousinNANABos taurusNAIlluminaIllumina HiSeq 2000FULL_LENGTH101single3612598127529915001648319720.5Browse results
ERX202571UBERON:0001401 longissimus thoracis musclelongissimus thoracisUBERON:0000112 sexually immature stage16 monthsmaleLimousinNANABos taurusNAIlluminaIllumina HiSeq 2000FULL_LENGTH101single4533943533886809001668519823.5Browse results

Showing 1 to 6 of 6 entries

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