Genome sequencing in three primate species

Experiment ID:ERP002376
Technology:RNA-Seq
Description:We sequenced several individuals from three primate species, using paired reads, on the Illumina platform.
Source:ERP002376 SRA
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Bulk RNA-Seq processed expression values in Macaca mulattaBulk RNA-Seq processed expression values in Pan troglodytes

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Showing 1 to 15 of 15 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX221778CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2287283820638923001591619823Browse results
ERX221779CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired4655099742273042001654520298.5Browse results
ERX221780CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired8476908376551037001675820435.5Browse results
ERX221781CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired190384740173094223001748120950Browse results
ERX221782CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2809417225298028001656220303Browse results
ERX221783CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired5671514751382420001719620670Browse results
ERX221784CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2364975821083147001567519737Browse results
ERX221785CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired4705402742260916001624020073Browse results
ERX221786CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2319349120903574001570219700.5Browse results
ERX221787CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAMacaca mulattaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired4483763140708215001628120053Browse results
ERX221793CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAmaleNANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired4329136937518495001771621573.5Browse results
ERX221794CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAmaleNANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired5754305550329856001790421752Browse results
ERX221795CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAfemaleNANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired222401108192318055001992123203Browse results
ERX221796CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAmaleNANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired5326961646828105001793921723.5Browse results
ERX221797CL:0000057 fibroblastfibroblastUBERON:0000104 life cycleNAmaleNANANAPan troglodytesNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired5851573443878975001802921656.5Browse results

Showing 1 to 15 of 15 entries

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