overview of gene expression dynamics during sheep early ovarian folliculogenesis

Experiment ID:ERP002459
Technology:RNA-Seq
Description:Separate transcription profiling of oocytes and granulosa cells for each follicle stage: primordial (PD), primary (PM), secondary (SC) follicles and the small antral stage (SA) obtained by Laser Capture Microdissection (LCM) and RNAseq. The purpose of this study was to describe global gene expression during early ovarian folliculogenesis for each follicular compartment, to identify differential and specific gene expression between the 2 follicular compartments and during follicular development, to investigate specific function and pathways and to explore bi-directional communication between oocytes and GC.
Source:ERP002459 SRA
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Bulk RNA-Seq processed expression values in Ovis aries

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX232331UBERON:0003981 primordial ovarian follicleoocyte of primordial follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired295535119657898001458418296.5Browse results
ERX232332UBERON:0003981 primordial ovarian follicleoocyte of primordial follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired3935641414430427001416518083Browse results
ERX232333UBERON:0000036 secondary ovarian follicleoocyte of secondary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired142291754039509001196116821Browse results
ERX232334UBERON:0000036 secondary ovarian folliclegranulosa cell of secondary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired4000964912551479001403817993Browse results
ERX232335UBERON:0000468 multicellular organismpituitary gland\, hypothalamus\, muscle\, skin\, heart\, lung\, intestine\, stomach\, kidney\, spleen\, liver and thecaUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired4758986321573984001403918036Browse results
ERX232336UBERON:0003981 primordial ovarian folliclegranulosa cell of primordial follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired270090068518384001420918125.5Browse results
ERX232337UBERON:0000036 secondary ovarian follicleoocyte of secondary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired4129072212639225001402217936Browse results
ERX232338UBERON:0000035 primary ovarian folliclegranulosa cell of primary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired4300584314002517001456418265.5Browse results
ERX232339UBERON:0000035 primary ovarian follicleoocyte of primary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired3395394710389293001546618824.5Browse results
ERX232340UBERON:0000035 primary ovarian follicleoocyte of primary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired3326697111486645001377717826Browse results
ERX232341UBERON:0000036 secondary ovarian folliclegranulosa cell of small antrum follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired2998553712212473001482418525Browse results
ERX232342UBERON:0003981 primordial ovarian folliclegranulosa cell of primordial follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired3447014412380006001525818690.5Browse results
ERX232343UBERON:0000036 secondary ovarian follicleoocyte of small antrum follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired5214818617028517001161516631Browse results
ERX232344UBERON:0000036 secondary ovarian follicleoocyte of secondary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired6739964821113470001337517559Browse results
ERX232345UBERON:0000036 secondary ovarian folliclegranulosa cell of small antrum follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired3343394111235710001262317242Browse results
ERX232346UBERON:0000035 primary ovarian folliclegranulosa cell of primary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired3140613310287946001315917575.5Browse results
ERX232347UBERON:0003981 primordial ovarian folliclegranulosa cell of primordial follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired579396302017571400974915654Browse results
ERX232348UBERON:0000036 secondary ovarian folliclegranulosa cell of secondary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired269491338635462001342717652Browse results
ERX232349UBERON:0000035 primary ovarian follicleoocyte of primary follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired3740887812211504001245717150Browse results
ERX232350UBERON:0000036 secondary ovarian follicleoocyte of small antrum follicleUBERON:0000112 sexually immature stageat birthfemaleLanglade, FranceNANAOvis ariesNAIlluminaIllumina HiSeq 2000FULL_LENGTH209paired4325293813059914001422418032.5Browse results

Showing 1 to 20 of 35 entries

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