HPA RNA-seq normal tissues

Experiment ID:ERP003613
Technology:RNA-Seq
Description:RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes.
Source:ERP003613 SRA
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Bulk RNA-Seq processed expression values in Homo sapiens

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Showing 1 to 20 of 171 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX288473UBERON:0001155 coloncolonUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1722858715296560002801135652.5Browse results
ERX288474UBERON:0000014 zone of skinskinUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1357825110851697002731935468Browse results
ERX288475UBERON:0001013 adipose tissueadipose tissueUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired45432013614275002166330638Browse results
ERX288476UBERON:0000082 adult mammalian kidneykidneyUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1216494310638287002828636048.5Browse results
ERX288477UBERON:0001043 esophagusesophagusUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1333904611400255002418333097Browse results
ERX288478UBERON:0000029 lymph nodelymph nodeUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired112299899185208002703734863.5Browse results
ERX288479UBERON:0001295 endometriumendometriumUBERON:0000113 post-juvenileadultfemaleNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired87362657236538002608134172Browse results
ERX288480UBERON:0001154 vermiform appendixappendixUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired91896617774024002642734251.5Browse results
ERX288481UBERON:0002107 liverliverUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired61290515656684002055929842Browse results
ERX288482UBERON:0002110 gall bladdergall bladderUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1321226710935231002527234484Browse results
ERX288483UBERON:0000029 lymph nodelymph nodeUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired115805789212249002383133079.5Browse results
ERX288484UBERON:0002371 bone marrowbone marrowUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1695316714505369002566134107.5Browse results
ERX288485UBERON:0000014 zone of skinskinUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1625298012482681002614835515.5Browse results
ERX288486UBERON:0001043 esophagusesophagusUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1743122915107402002497334073.5Browse results
ERX288487UBERON:0002108 small intestinesmall intestineUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired97947878434650002619134099Browse results
ERX288488UBERON:0000992 ovaryanimal ovaryUBERON:0000113 post-juvenileadultfemaleNANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1576462713820765002618234512.5Browse results
ERX288489UBERON:0001154 vermiform appendixappendixUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired87525597449886002593833991Browse results
ERX288490UBERON:0001013 adipose tissueadipose tissueUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2437285820751816002574333898.5Browse results
ERX288491UBERON:0002048 lunglungUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired87822577410685002524033370.5Browse results
ERX288492UBERON:0001044 saliva-secreting glandsalivary glandUBERON:0000113 post-juvenileadultNANANANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired1427184612213807002599634273.5Browse results

Showing 1 to 20 of 171 entries

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