Sheep Tissue Atlas

Experiment ID:ERP005642
Technology:RNA-Seq
Description:Sheep total RNA was extracted from embryonic and adult tissues. Sequencing libraries were prepared from the RNA using the Illumina TruSeq stranded total RNA with the Ribo Zero gold option for the rRNA removal. The fragmentation in the standard protocol was modified to increase the average insert size in the library. Sequencing with 151 base paired end reads was performed on an Illumina HiSeq 2500 in rapid mode.
Source:ERP005642 SRA
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Bulk RNA-Seq processed expression values in Ovis aries

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Showing 1 to 20 of 236 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX454804UBERON:0000922 embryowhole embryoUBERON:0000068 embryo stageembryoNATexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired9428976238417712002200124900Browse results
ERX454805UBERON:0000922 embryowhole embryoUBERON:0000068 embryo stageembryoNATexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired9620903239234079002206124933Browse results
ERX454806UBERON:0001898 hypothalamusHypothalamusUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired204182179690183001919223496Browse results
ERX454807UBERON:0001898 hypothalamusHypothalamusUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired204618969708627001928323526.5Browse results
ERX454808UBERON:0000007 pituitary glandPituitary glandUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired59098282326474001700822251.5Browse results
ERX454809UBERON:0000007 pituitary glandPituitary glandUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired98061273993977001799822796.5Browse results
ERX454810UBERON:0000007 pituitary glandPituitary glandUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired101485864144746001804722858Browse results
ERX454811UBERON:0000007 pituitary glandPituitary glandUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired59199942312641001706022271Browse results
ERX454812UBERON:0000007 pituitary glandPituitary glandUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired98055853988580001804422849Browse results
ERX454813UBERON:0000007 pituitary glandPituitary glandUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired102017574166686001807822842Browse results
ERX454814UBERON:0002037 cerebellumCerebellumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired52651282885153001627921825Browse results
ERX454815UBERON:0002037 cerebellumCerebellumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired90449625031348001731922380Browse results
ERX454816UBERON:0002037 cerebellumCerebellumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired93357445201978001732222403Browse results
ERX454817UBERON:0002037 cerebellumCerebellumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired53746002936233001638121866.5Browse results
ERX454818UBERON:0002037 cerebellumCerebellumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired90279945019564001729822392.5Browse results
ERX454819UBERON:0002037 cerebellumCerebellumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired93944555232781001739422450.5Browse results
ERX454820UBERON:0001869 cerebral hemisphereCerebrumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired73906843367573001723122359.5Browse results
ERX454821UBERON:0001869 cerebral hemisphereCerebrumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired120543945595901001813122882Browse results
ERX454822UBERON:0001869 cerebral hemisphereCerebrumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired124609635791682001817822905.5Browse results
ERX454823UBERON:0001869 cerebral hemisphereCerebrumUBERON:0034919 juvenile stagejuvenile\, 6-10 monthsfemaleTexelNANAOvis ariesNAIlluminaIllumina HiSeq 2500FULL_LENGTH151paired74239923377489001726622365Browse results

Showing 1 to 20 of 236 entries

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