The establishment of PrV latency in the pig host (RNA-seq data)

Experiment ID:ERP006380
Technology:RNA-Seq
Description:A 2.5 kb deletion containing a cluster of nine miRNAs in the LAT locus of the pseudorabies virus affects the host response of porcine trigeminal ganglia during established latency.
Source:ERP006380 SRA

List of assays

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entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX525396UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2637811023016263001981622399.5Browse results
ERX525397UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2268532919777200001962322292Browse results
ERX525398UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2302657220068487001958422263.5Browse results
ERX525399UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2483231621688032001976922369.5Browse results
ERX525400UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2103237218356116001953222229Browse results
ERX525401UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2124398918535880001962322281.5Browse results
ERX525402UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2695006523358784001998022532.5Browse results
ERX525403UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2334484020215370001970922367Browse results
ERX525404UBERON:0001675 trigeminal gangliontrigeminal ganglionSscrDv:0000050 17-week-old stage (pig)122 days (60+62)NAGerman LandraceNANASus scrofaNAIlluminaIllumina HiSeq 2000FULL_LENGTH101paired2392688720709425001983122455Browse results