Rhesus macaque RNA-seq time-series of the development of six major organs

Experiment ID:ERP108988
Technology:RNA-Seq
Description:This dataset covers the development of 6 organs (brain, cerebellum, heart, kidney, liver and testis) from embryonic day 93 to adulthood.
Source:ERP108988 SRA
Download:
Bulk RNA-Seq processed expression values in Macaca mulatta

List of assays

Show

entries

Showing 1 to 20 of 165 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX2613081UBERON:0001890 forebrainforebrainUBERON:0007221 neonate stage23 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4534308631520747002106822703.5Browse results
ERX2613082UBERON:0001890 forebrainforebrainUBERON:0007221 neonate stage22 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3600695522506089002086822580.5Browse results
ERX2613083UBERON:0001890 forebrainforebrainUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4365425529576007002117822759.5Browse results
ERX2613084UBERON:0001890 forebrainforebrainUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2747209419330790002016022163Browse results
ERX2613085UBERON:0001890 forebrainforebrainUBERON:0007221 neonate stage2 days post birthfemalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4015103427898685001982021887.5Browse results
ERX2613087UBERON:0000948 heartheartUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single5959310642580291002021222134Browse results
ERX2613088UBERON:0000948 heartheartUBERON:0007221 neonate stage23 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3704044725878172001995421929Browse results
ERX2613090UBERON:0000948 heartheartUBERON:0007221 neonate stage7 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4962176336015869001900721472Browse results
ERX2613091UBERON:0000948 heartheartUBERON:0007221 neonate stage20 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3001328320980384001929321569Browse results
ERX2613092UBERON:0002028 hindbrainhindbrainUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3255092321052209002080122494Browse results
ERX2613093UBERON:0002028 hindbrainhindbrainUBERON:0007221 neonate stage22 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2857091819253594002045522287.5Browse results
ERX2613094UBERON:0002028 hindbrainhindbrainUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3389948821287157002081222482Browse results
ERX2613095UBERON:0002028 hindbrainhindbrainUBERON:0007221 neonate stage23 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4273062728625774002093722571.5Browse results
ERX2613096UBERON:0000082 adult mammalian kidneykidneyUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3905037227929920002052622264.5Browse results
ERX2613097UBERON:0000082 adult mammalian kidneykidneyUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4893070533765074002091822548Browse results
ERX2613098UBERON:0000082 adult mammalian kidneykidneyUBERON:0007221 neonate stage22 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3010552720033311002046822294.5Browse results
ERX2613099UBERON:0000082 adult mammalian kidneykidneyUBERON:0007221 neonate stage2 days post birthfemalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single4212729531073032002037522228Browse results
ERX2613100UBERON:0000082 adult mammalian kidneykidneyUBERON:0007221 neonate stage20 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3452271724313679002010021993.5Browse results
ERX2613101UBERON:0002107 liverliverUBERON:0007221 neonate stage22 days post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single2284946216857275001862021143Browse results
ERX2613102UBERON:0002107 liverliverUBERON:0007221 neonate stage1 day post birthmalewild-typeNANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH101single3666994827184697001927021522.5Browse results

Showing 1 to 20 of 165 entries

This website requires cookies, and limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our privacy notice.
Do not show this banner again