PIG transcriptome and gene expression

Experiment ID:ERP143068
Technology:RNA-Seq
Description:RNA sequencing of pig tissues for transcritpome annotation and expression analysis.This study is part of the FAANG project, promoting rapid prepublication of data to support the research community. These data are released under Fort Lauderdale principles, as confirmed in the Toronto Statement (Toronto International Data Release Workshop. Birney et al. 2009. Pre-publication data sharing. Nature 461:168-170). Any use of this dataset must abide by the FAANG data sharing principles. Data producers reserve the right to make the first publication of a global analysis of this data. If you are unsure if you are allowed to publish on this dataset, please contact the FAANG Data Coordination Centre and FAANG consortium (email faang-dcc@ebi.ac.uk and cc faang@iastate.edu) to enquire.The full guidelines can be found at http://www.faang.org/data-share-principle.
Source:ERP143068 ENA
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Bulk RNA-Seq processed expression values in Sus scrofa

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX10075940UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsfemaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired4523863236645283002066126463.5Browse results
ERX10075941UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsfemaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired4619285737211182002054826405Browse results
ERX10075942UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsfemaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired5237813942864416002061526427.5Browse results
ERX10075943UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsfemaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired5487054244268738002085326583.5Browse results
ERX10075944UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsfemaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired5209204542784969002055826419Browse results
ERX10075945UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsfemaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired5670765646156643002090126597Browse results
ERX10075946UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired4694939438458230002031826299Browse results
ERX10075947UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired9844067179852961002178327127.5Browse results
ERX10075948UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired7739428964135488002123426813.5Browse results
ERX10075949UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired4985203340227812002070526475.5Browse results
ERX10075950UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired6831193455219063002167127019Browse results
ERX10075951UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired4931332140453208002020226245.5Browse results
ERX10075952UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired6488965453608988002061326468Browse results
ERX10075953UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired6376801252574613002072926529.5Browse results
ERX10075954UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired6330503751280850002118826761Browse results
ERX10075955UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired5429895644076746002096026596Browse results
ERX10075956UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired6695812554568607002135726850Browse results
ERX10075957UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired7754369364330213002144426908Browse results
ERX10075958UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired6233720651833700002095926630Browse results
ERX10075959UBERON:0001371 gluteus mediusGluteus mediusSscrDv:0000054 5-month-old stage (pig)6 monthsmaleDurocNANASus scrofaNAIlluminaIllumina NovaSeq 6000FULL_LENGTH151paired5852515247162155002050926426Browse results

Showing 1 to 20 of 900 entries

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