modENCODE D. melanogaster Developmental Total RNA-Seq

Experiment ID:SRP001696
Technology:RNA-Seq
Description:These data were produced for the modENCODE project (http://www.modencode.org/). For a description of the protocols and other experimental details please refer to the data distribution site http://www.modencode.org/Celniker.shtml. In accordance with NHGRI guidelines for community resource projects (http://www.genome.gov/), there is no restriction on the use or analysis of these data. However, the end-user is asked to respect a nine-month moratorium (from the public submission date) before submitting manuscripts describing analysis of these data. If the data producer has published any description of these data before the nine-month period, the moratorium ceases to apply and this accession page will be updated to note the appropriate citation.
Source:SRP001696 SRA
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Bulk RNA-Seq processed expression values in Drosophila melanogaster

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Showing 1 to 20 of 149 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX246401UBERON:0000922 embryoembryoFBdv:00005306 embryonic stage 4 (fruit fly)embryos, 2-4 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4328310439728289001288514565.5Browse results
SRX246402UBERON:0000922 embryoembryoFBdv:00005335 embryonic stage 17 (fruit fly)embryos, 22-24 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5322690046873308001468015659.5Browse results
SRX246403UBERON:0007023 adult organismadultFBdv:00007080 day 5 of adulthood (fruit fly)Adult 5 days post-eclosionmaleNANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5219652344216618001589216532.5Browse results
SRX246404UBERON:0003143 pupapupaeFBdv:00005366 pharate adult stage P15 (fruit fly)pupae, 4 days after WPPNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4947149240790678001535416091Browse results
SRX246405UBERON:0007023 adult organismadultFBdv:00007076 day 1 of adulthood (fruit fly)Adult 1 day post-eclosionmaleNANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5470514148959054001569016399Browse results
SRX246406UBERON:0002548 larvalarvaeFBdv:00005339 third instar larval stage (fruit fly)L3 stage larvae, 12 hr post-moltNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5057371346069051001422215298Browse results
SRX246407UBERON:0007023 adult organismadultFBdv:00007076 day 1 of adulthood (fruit fly)Adult 1 day post-eclosionfemaleNANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4992953343258936001469815608.5Browse results
SRX246408UBERON:0000922 embryoembryoUBERON:0000110 neurula stageembryos, 4-6 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired7261071166076049001389315157.5Browse results
SRX246409UBERON:0000922 embryoembryoUBERON:0000068 embryo stageembryos, 8-10 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4981094545046500001437015453.5Browse results
SRX246410UBERON:0002548 larvalarvaeFBdv:00005337 first instar larval stage (fruit fly)L1 stage larvaeNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4486162240217457001457915595Browse results
SRX246411UBERON:0000922 embryoembryoFBdv:00005335 embryonic stage 17 (fruit fly)embryos, 20-22 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4747249841911423001476515706.5Browse results
SRX246412UBERON:0000922 embryoembryoFBdv:00005334 embryonic stage 16 (fruit fly)embryos, 14-16 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4787507743172612001469615675.5Browse results
SRX246413UBERON:0000922 embryoembryoUBERON:0000068 embryo stageembryos, 0-2 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4811907345976151001173513842Browse results
SRX246414UBERON:0000922 embryoembryoFBdv:00005335 embryonic stage 17 (fruit fly)embryos, 16-18 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5966311751287269001471415668Browse results
SRX246415UBERON:0000922 embryoembryoUBERON:0000068 embryo stageembryos, 12-14 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5196471947390015001467315677Browse results
SRX246416UBERON:0003143 pupapupaeFBdv:00005355 pharate adult stage P8 (fruit fly)pupae, 2 days after WPPNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5053016441365574001520415987.5Browse results
SRX246417UBERON:0003143 pupapupaeFBdv:00005353 pupal stage P6 (fruit fly)pupae, 24 hrs after WPPNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired5416668948103263001509315910Browse results
SRX246418UBERON:0000922 embryoembryoFBdv:00005335 embryonic stage 17 (fruit fly)embryos, 16-18 hrNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4514841439705932001505715866.5Browse results
SRX246419UBERON:0003143 pupapupaeFBdv:00005356 pharate adult stage P9 (fruit fly)pupae, 3 days after WPPNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired6027452648611355001530316071Browse results
SRX246420UBERON:0003143 pupapupaeFBdv:00005348 prepupal stage P4(ii) (fruit fly)pupae, 12 hr after WPPNANANANADrosophila melanogasterNAIlluminaIllumina HiSeq 2000FULL_LENGTH100paired4697358240580107001500015844.5Browse results

Showing 1 to 20 of 149 entries

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