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Library ID Identifier of the RNA-Seq library | Anat. entity ID ID of the anatomical localization of the sample | Anat. entity name Name of the anatomical localization of the sample | Anat. entity author annotation Free text annotation of anatomical localization of the sample as provided by authors | Stage ID ID of the developmental and life stage of the sample | Stage name Name of the developmental and life stage of the sample | Stage author annotation Free text annotation of the developmental and life stage of the sample as provided by authors | Sex Annotation of the sex of the sample | Strain Annotation of the strain of the sample | Time Free text annotation of the time of sampling as provided by authors | Time unit Unit for the time of sampling as provided by authors | Species | Physiological status Physiological status of the organism at time of sampling | Technology | Sequencing platform | Sequenced transcript part Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced. | Fragmentation Size of the RNA fragmentation | Run sequencing type Paired-end or single-read run | Total read count Total number of reads for the library. | Mapped read count Number of reads that could be mapped to the transcriptome. | Total UMI count Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs. | Mapped UMI count Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs. | Distinct rank count When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee. | Max rank When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee. | Link to processed expression values See the processed expression value results for this assay |
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| SRX054595 | UBERON:0001401 | longissimus thoracis muscle | longissimus dorsi muscle | SscrDv:0000025 | 28-day-old stage (pig) | postnatal day 28 | male | Landrace | NA | NA | Sus scrofa | NA | Illumina | Illumina Genome Analyzer | FULL_LENGTH | 35 | single | 3136877 | 159943 | 0 | 0 | 6810 | 14996 | Browse results |
| SRX054606 | UBERON:0001401 | longissimus thoracis muscle | longissimus dorsi muscle | SscrDv:0000044 | 12-week-old stage (pig) | postnatal day 90 | male | Lantang | NA | NA | Sus scrofa | NA | Illumina | Illumina Genome Analyzer | FULL_LENGTH | 35 | single | 4338570 | 229128 | 0 | 0 | 7589 | 15418 | Browse results |
| SRX054608 | UBERON:0001401 | longissimus thoracis muscle | longissimus dorsi muscle | SscrDv:0000059 | 6-month-old stage (pig) | postnatal day 180 | male | Lantang | NA | NA | Sus scrofa | NA | Illumina | Illumina Genome Analyzer | FULL_LENGTH | 35 | single | 3191280 | 221640 | 0 | 0 | 6908 | 15061 | Browse results |