Branchiostoma lanceolatum

Gene : TGM1 - BL95095 - Branchiostoma lanceolatum (Common lancelet)

General information

Gene identifier

BL95095

Name

TGM1

Description

Synonym(s)

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0004455neurula embryo97.754.85e-9See source data
RSCAIE
UBERON:0001003skin epidermis93.521.75e-4See source data
RSCAIE
UBERON:0012473oral cirrus93.025.02e-5See source data
RSCAIE
UBERON:0004734gastrula86.522.57e-5See source data
RSCAIE
UBERON:0002548larva84.135.60e-5See source data
RSCAIE
UBERON:0000992ovary84.071.25e-4See source data
RSCAIE
CL:0000025egg cell82.850.002See source data
RSCAIE
UBERON:0005054primary dorsal nerve cord79.238.95e-4See source data
RSCAIE
UBERON:0008815pharyngeal slit78.090.002See source data
RSCAIE
UBERON:0002385muscle tissue74.570.002See source data
RSCAIE
UBERON:0000473testis63.800.002See source data
RSCAIE
UBERON:0000307blastula61.470.027See source data
RSCAIE
UBERON:0012474hepatic cecum60.390.009See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

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entries

No reported absence of expression for this gene

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Chordata

45 species

Homo sapiens (human)

Mus musculus (mouse)

Danio rerio (zebrafish)




Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)

Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)

Macaca fascicularis (Crab-eating macaque)

Macaca mulatta (macaque)

Macaca nemestrina (Pig-tailed macaque)

Papio anubis (Olive baboon)

Gorilla gorilla (gorilla)

Pan paniscus (bonobo)

Pan troglodytes (chimpanzee)

Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)

Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)

Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)


Xenopus tropicalis (western clawed frog)

Anolis carolinensis (green anole)


Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)


Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)



Gadus morhua (Atlantic cod)

Poecilia reticulata (Guppy)

Oryzias latipes (Japanese rice fish)


Astatotilapia calliptera (Eastern happy)

Neolamprologus brichardi (Fairy cichlid)

Scophthalmus maximus (Turbot)

Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Latimeria chalumnae (Coelacanth)



82 genes

ENSG00000092295 TGM1
ENSG00000163810 TGM4
ENSMUSG00000022218 Tgm1
ENSMUSG00000025787 Tgm4
ENSDARG00000005913 tgm1l3
ENSDARG00000017799 tgm1
ENSDARG00000101407 tgm1l4
ENSDARG00000101595 tgm1l2
ENSDARG00000102106 tgm1l1
ENSCAFG00000012182 TGM1
ENSFCAG00000005594 TGM1
ENSECAG00000017485 TGM1
ENSSSCG00000001993 TGM1
ENSBTAG00000003920 TGM1
ENSCHIG00000020679 TGM1
ENSOARG00000019146 TGM1
ENSCPOG00000005132 TGM4
ENSCPOG00000014400 TGM1
ENSGALG00000033171 TGM4
ENSMGAG00000011669 TGM4
ENSOANG00000006809
ENSCJAG00000006740 TGM1
ENSCATG00000031413 TGM1
ENSCATG00000038831 TGM4
ENSMFAG00000030591 TGM1
ENSMFAG00000040342 TGM4
ENSMMUG00000012452 TGM1
ENSMMUG00000058890 TGM4
ENSMNEG00000033954 TGM1
ENSMNEG00000043309 TGM4
ENSPANG00000006291 TGM4
ENSPANG00000021783 TGM1
ENSGGOG00000013478 TGM4
ENSGGOG00000016125 TGM1
ENSPPAG00000029548 TGM1
ENSPPAG00000040609 TGM4
ENSPTRG00000006209 TGM1
ENSPTRG00000014827 TGM4
ENSMICG00000001746 TGM1
ENSCSAG00000015944 TGM1
ENSCSAG00000016427 TGM4
108386620 TGM1
ENSRNOG00000004320 Tgm4
ENSRNOG00000020136 Tgm1
ENSMODG00000003160 TGM1
108695563 LOC108695563
108704915 LOC108704915
108718500 LOC108718500
ENSXETG00000008494 tgm4
ENSXETG00000014626 tgm1
ENSACAG00000001559
ENSACAG00000004168 LOC100568257
ENSACAG00000004309 LOC100551686
ENSLOCG00000002150 TGM4
118223818 LOC118223818
118225941 tgm1l1
118234052 LOC118234052
ENSAMXG00000000991 tgm1l2
ENSELUG00000011151 tgm1l2
ENSSSAG00000039471 tgm1l1
ENSSSAG00000041726 TGM1
ENSSSAG00000049361 tgm1
ENSSSAG00000067898 tgm1
ENSGMOG00000003423 tgm1l2
ENSGMOG00000005135 tgm1l1
ENSPREG00000020472 tgm1l2
ENSPREG00000022332 tgm1l1
ENSORLG00000001358 TGM1
ENSORLG00000012464 tgm1l1
ENSORLG00000013696 LOC101174094
ENSACLG00000014708 tgm1l2
ENSACLG00000021214 tgm1l1
ENSNBRG00000001823 tgm1
ENSNBRG00000018786 tgm1l1
ENSSMAG00000015090 tgm1l2
ENSSMAG00000015142 tgm1l1
ENSGACG00000014435 tgm1l1
ENSNFUG00015006898 tgm1l1
ENSLACG00000001229 LOC102355065
ENSLACG00000002703 LOC102367266
ENSLACG00000002988
ENSLACG00000012840 TGM4
Compare expression
Orthology information comes from OMA : BL95095.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
Branchiostoma

3 genes

BL95443 TGM1
BL95848 TGM1
BL95849 TGM1
Compare expression
Paralogy information comes from OMA : BL95095.

Cross-references

EnsemblMetazoa

BL95095 (TGM1)