Danio rerio

Gene : sdr16c5a - ENSDARG00000016233 - Danio rerio (zebrafish)

General information

Gene identifier

ENSDARG00000016233

Name

sdr16c5a

Description

short chain dehydrogenase/reductase family 16C, member 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2049]

Synonym(s)

zgc:76925

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0003059presomitic mesoderm91.042.28e-4See source data
RSCAIE
UBERON:0002107liver90.138.57e-7See source data
RSCAIE
UBERON:0009620tail bud paraxial mesoderm87.952.66e-4See source data
RSCAIE
UBERON:4000164caudal fin85.933.28e-4See source data
RSCAIE
UBERON:0002329somite85.542.66e-4See source data
RSCAIE
UBERON:0000160intestine84.592.45e-6See source data
RSCAIE
UBERON:0002548larva80.661.41e-8See source data
RSCAIE
UBERON:0000992ovary79.419.80e-8See source data
RSCAIE
UBERON:0000014zone of skin78.911.47e-5See source data
RSCAIE
UBERON:0019248early embryo77.301.86e-6See source data
RSCAIE
UBERON:0003982mature ovarian follicle75.636.35e-4See source data
RSCAIE
UBERON:0007010cleaving embryo74.412.19e-4See source data
RSCAIE
UBERON:0000307blastula74.133.43e-6See source data
RSCAIE
UBERON:0000473testis72.801.65e-5See source data
RSCAIE
UBERON:0000206pharyngeal gill70.932.61e-5See source data
RSCAIE
UBERON:0004734gastrula70.691.76e-5See source data
RSCAIE
UBERON:0000080mesonephros70.432.19e-6See source data
RSCAIE
UBERON:0001474bone element69.201.43e-6See source data
RSCAIE
UBERON:0007132head kidney68.344.99e-6See source data
RSCAIE
UBERON:0000955brain67.520.001See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002082cardiac ventricle65.030.204See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Clupeocephala

8 species

Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Compare expression
Teleostei

9 species

Anguilla anguilla (European freshwater eel)

Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Compare expression
Neopterygii

10 species

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Compare expression
Euteleostomi

41 species

Homo sapiens (human)
Mus musculus (mouse)
Canis lupus familiaris (dog)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Oryctolagus cuniculus (rabbit)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Microcebus murinus (Gray mouse lemur)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)

43 genes

Compare expression
Orthology information comes from OMA : ENSDARG00000016233.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
Neopterygii

1 gene

Compare expression
BilateriaCompare expression
Metazoa

60 genes

ENSDARG00000001169 hsd17b8
ENSDARG00000002467 rdh14b
ENSDARG00000003869 decr1
ENSDARG00000004141 zgc:92630
ENSDARG00000007614 wwox
ENSDARG00000008306 rdh5
ENSDARG00000008491 si:ch211-107o10.3
ENSDARG00000009074 cbr4
ENSDARG00000010764 flj13639
ENSDARG00000011371 zgc:64106
ENSDARG00000011770 dhrs12
ENSDARG00000012369 rdh10b
ENSDARG00000017781 hsd17b10
ENSDARG00000017794 sdr16c5b
ENSDARG00000017882 rdh1
ENSDARG00000018069 rdh12
ENSDARG00000019260 dhrs9
ENSDARG00000021135 dhrs4
ENSDARG00000021149 cbr1l
ENSDARG00000026322 dhrs13a.1
ENSDARG00000028862 rdh20
ENSDARG00000031299 dhrs11b
ENSDARG00000031814 dhrs13b.1
ENSDARG00000034577 si:dkey-23o4.6
ENSDARG00000035129 zgc:101858
ENSDARG00000035579 si:dkey-174n20.1
ENSDARG00000036587 cbr1
ENSDARG00000039299 rdh14a
ENSDARG00000041137 dhrs13a.3
ENSDARG00000041873 si:dkey-221h15.4
ENSDARG00000044803 dhrs3b
ENSDARG00000044982 dhrs3a
ENSDARG00000045257 decr2
ENSDARG00000045277 rdh12l
ENSDARG00000046090 dhrs11a
ENSDARG00000052696 bdh2
ENSDARG00000052700 SLC9B2
ENSDARG00000054797 zgc:153441
ENSDARG00000054842 hsd17b14
ENSDARG00000055976 pecr
ENSDARG00000058730 rdh10a
ENSDARG00000058966 zgc:112332
ENSDARG00000059388 bdh1
ENSDARG00000068474 si:dkey-94e7.2
ENSDARG00000076970 si:ch211-165b10.3
ENSDARG00000079271 dcxr
ENSDARG00000079280 dhrsx
ENSDARG00000088140 hsd17b7
ENSDARG00000089205 si:dkey-73n8.3
ENSDARG00000098746 dhrs13l1
ENSDARG00000109521 dhrs3a
ENSDARG00000111081 dhrs13b.1
ENSDARG00000111240 dhrs13a.2
ENSDARG00000112531 dhrs11a
ENSDARG00000113420 zgc:92630
ENSDARG00000113421 rdh10a
ENSDARG00000113930 zgc:112332
ENSDARG00000113997 si:dkey-23o4.6
ENSDARG00000114970 si:dkey-73n8.3
ENSDARG00000115947 si:ch211-107o10.3
Compare expression
Paralogy information comes from OMA : ENSDARG00000016233.

Cross-references