Rattus norvegicus

Gene : Tgm4 - ENSRNOG00000004320 - Rattus norvegicus (rat)

General information

Gene identifier

ENSRNOG00000004320

Name

Tgm4

Description

transglutaminase 4 [Source:RGD Symbol;Acc:620785]

Synonym(s)

dp1

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0002048lung67.132.56e-5See source data
RSCAIE
UBERON:0002115jejunum57.982.50e-6See source data
RSCAIE
UBERON:0002114duodenum57.084.52e-5See source data
RSCAIE
UBERON:0000082adult mammalian kidney56.983.21e-5See source data
RSCAIE
UBERON:0001134skeletal muscle tissue56.642.34e-4See source data
RSCAIE
UBERON:0002370thymus54.857.34e-4See source data
RSCAIE
UBERON:0001155colon54.301.32e-4See source data
RSCAIE
UBERON:0001264pancreas54.240.002See source data
RSCAIE
UBERON:0000948heart53.883.67e-4See source data
RSCAIE
UBERON:0000992ovary53.252.55e-4See source data
RSCAIE
UBERON:0000945stomach52.855.50e-5See source data
RSCAIE
UBERON:0001377quadriceps femoris52.064.94e-4See source data
RSCAIE
UBERON:0001043esophagus52.047.95e-5See source data
RSCAIE
UBERON:0002116ileum51.132.21e-4See source data
RSCAIE
UBERON:0002106spleen51.126.43e-4See source data
RSCAIE
UBERON:0002107liver50.920.004See source data
RSCAIE
UBERON:0002037cerebellum39.230.007See source data
RSCAIE
UBERON:0001870frontal cortex37.060.017See source data
RSCAIE
UBERON:0000473testis34.280.026See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0001954Ammon's horn36.350.134See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee

Sources of raw data:

  • Affymetrix data: GEO

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Murinae

1 species

Mus musculus (mouse)
Compare expression
Rodentia

2 species

Mus musculus (mouse)
Cavia porcellus (guinea pig)
Compare expression
Euarchontoglires

12 species

Homo sapiens (human)
Mus musculus (mouse)
Cavia porcellus (guinea pig)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Mammalia

13 species

Homo sapiens (human)
Mus musculus (mouse)
Cavia porcellus (guinea pig)
Ornithorhynchus anatinus (platypus)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Amniota

16 species

Homo sapiens (human)
Mus musculus (mouse)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Anolis carolinensis (green anole)

Compare expression
Tetrapoda

18 species

Homo sapiens (human)
Mus musculus (mouse)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)

Compare expression
Sarcopterygii

19 species

Homo sapiens (human)
Mus musculus (mouse)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)

Latimeria chalumnae (Coelacanth)
Compare expression
Euteleostomi

21 species

Homo sapiens (human)
Mus musculus (mouse)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Latimeria chalumnae (Coelacanth)
Compare expression
Chordata

22 species

Homo sapiens (human)
Mus musculus (mouse)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Xenopus laevis (African clawed frog)
Xenopus tropicalis (western clawed frog)
Anolis carolinensis (green anole)

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Branchiostoma lanceolatum (Common lancelet)



Latimeria chalumnae (Coelacanth)
Compare expression
Orthology information comes from OMA : ENSRNOG00000004320.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
EuteleostomiCompare expression
Paralogy information comes from OMA : ENSRNOG00000004320.

Cross-references