Species: Danio rerio (zebrafish)
General information
Scientific name
Danio rerio
Common name
zebrafish
Species ID
Genome source
Experiment list
Gene expression call files
Bgee provides calls of presence/absence of expression. Each call corresponds to a unique combination of a gene, an anatomical entity, a life stage, a sex, and a strain, with reported presence or absence of expression. More information in our documentation.
Anatomical entities only
- File without advanced column:
Danio_rerio_expr_simple.tsv.gz(15.8 MB) - File with advanced column:
Danio_rerio_expr_simple.tsv.gz(28.7 MB)
Anatomical entities, developmental stages, sexes and strains
- File without advanced column:
Danio_rerio_expr_simple_all_conditions.tsv.gz(42.8 MB) - File with advanced column:
Danio_rerio_expr_advanced_all_conditions.tsv.gz(76.9 MB)
Processed expression value files
Bgee provides annotations and experiment annotations, and processed expression values. More information in our documentation.
Affymetrix
- Experiments/chips annotations and meta data:
Danio_rerio_Affymetrix_experiments_chips.tar.gz(22.6 KB) - Data (signal intensities):
Danio_rerio_Affymetrix_probesets.tar.gz(30.2 MB)
RNA-Seq
- Experiments/libraries annotations and meta data:
Danio_rerio_RNA-Seq_experiments_libraries.tar.gz(20.3 KB) - Data (read counts, TPMs):
Danio_rerio_RNA-Seq_read_counts_TPM.tar.gz(157.0 MB)
Full length RNA-Seq
No data
Droplet based RNA-Seq
No data