Species: Homo sapiens (human)
General information
Scientific name
Homo sapiens
Common name
human
Species ID
Genome source
Experiment list
Gene expression call files
Bgee provides calls of presence/absence of expression. Each call corresponds to a unique combination of a gene, an anatomical entity, a life stage, a sex, and an ethnicity, with reported presence or absence of expression. More information in our documentation.
Anatomical entities only
- File without advanced column:
Homo_sapiens_expr_simple.tsv.gz(174.0 MB) - File with advanced column:
Homo_sapiens_expr_simple.tsv.gz(433.1 MB)
Anatomical entities, developmental stages, sexes and ethnicities
- File without advanced column:
Homo_sapiens_expr_simple_all_conditions.tsv.gz(1.0 GB) - File with advanced column:
Homo_sapiens_expr_advanced_all_conditions.tsv.gz(2.0 GB)
Processed expression value files
Bgee provides annotations and experiment annotations, and processed expression values. More information in our documentation.
Affymetrix
- Experiments/chips annotations and meta data:
Homo_sapiens_Affymetrix_experiments_chips.tar.gz(317.4 KB) - Data (signal intensities):
Homo_sapiens_Affymetrix_probesets.tar.gz(2.0 GB)
RNA-Seq
- Experiments/libraries annotations and meta data:
Homo_sapiens_RNA-Seq_experiments_libraries.tar.gz(434.5 KB) - Data (read counts, TPMs):
Homo_sapiens_RNA-Seq_read_counts_TPM.tar.gz(2.8 GB)
Full length RNA-Seq
- Experiments/libraries annotations and meta data:
Homo_sapiens_Full_Length_SC_RNA-Seq_experiments_libraries.tar.gz(8.8 KB) - Processed expression values (read counts, TPMs)
Homo_sapiens_Full-Length_SC_RNA-Seq_read_counts_TPM.tar.gz(42.0 MB) - Processed H5AD data per cell (read counts)
Homo_sapiens_full_length_h5ad.tar.gz(8.0 MB)
Droplet based RNA-Seq
- Experiments/libraries annotations and meta data:
Homo_sapiens_Droplet_Based_SC_RNA-Seq_experiments_libraries.tar.gz(23.1 KB) - Processed expression values (UMI counts, CPMs)
Homo_sapiens_Droplet-Based_SC_RNA-Seq_read_counts_CPM.tar.gz(2.0 GB) - Processed H5AD data per cell (UMI counts)
Homo_sapiens_droplet_based_h5ad.tar.gz(4.3 GB)