Olfactory_transcriptomics_in_mammals

Experiment ID:ERP006696
Technology:RNA-Seq
Description:In this study RNA was extracted from the olfactory mucosa of three individuals of four mammalian species: cow, macaque, marmoset and humans. The RNA was sequenced using the Illumina Hiseq2500 platform.
Source:ERP006696 SRA
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Bulk RNA-Seq processed expression values in Homo sapiensBulk RNA-Seq processed expression values in Macaca mulattaBulk RNA-Seq processed expression values in Bos taurusBulk RNA-Seq processed expression values in Callithrix jacchus

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Showing 1 to 20 of 48 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX675425UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANALimousin CrossNANABos taurusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired126103279590397001858821146Browse results
ERX675426UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANALimousin CrossNANABos taurusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired125414949922106001806520859.5Browse results
ERX675427UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANABritish BlueNANABos taurusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired115176388523083001841421048Browse results
ERX675428UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1147431010375258002657834773.5Browse results
ERX675429UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired112272969290025002605034260Browse results
ERX675430UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1275142310048243002628134491Browse results
ERX675431UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0034919 juvenile stage12.5 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired142851906471706002011623192.5Browse results
ERX675432UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0007222 late adult stage122 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired138757126125600001985923158Browse results
ERX675433UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0018241 prime adult stage28 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired150174756230812001970122866.5Browse results
ERX675434UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired110542237567600001484019121Browse results
ERX675435UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired115055359284467001960422018Browse results
ERX675436UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1616195213201337001953622025.5Browse results
ERX675437UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANALimousin CrossNANABos taurusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired128920259804104001862121151.5Browse results
ERX675438UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANALimousin CrossNANABos taurusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1282911610147289001808820844Browse results
ERX675439UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANABritish BlueNANABos taurusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired117628948703602001841121081.5Browse results
ERX675440UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1174749710623008002663534758Browse results
ERX675441UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired114764649497979002609234325.5Browse results
ERX675442UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1303448710276496002632834527.5Browse results
ERX675443UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0034919 juvenile stage12.5 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired146331386620897002022323327.5Browse results
ERX675444UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0007222 late adult stage122 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired142196346276451001988223235.5Browse results

Showing 1 to 20 of 48 entries

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