Olfactory_transcriptomics_in_mammals

Experiment ID:ERP006696
Technology:RNA-Seq
Description:In this study RNA was extracted from the olfactory mucosa of three individuals of four mammalian species: cow, macaque, marmoset and humans. The RNA was sequenced using the Illumina Hiseq2500 platform.
Source:ERP006696 SRA
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Bulk RNA-Seq processed expression values in Homo sapiensBulk RNA-Seq processed expression values in Macaca mulattaBulk RNA-Seq processed expression values in Bos taurusBulk RNA-Seq processed expression values in Callithrix jacchus

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Showing 41 to 48 of 48 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX675465UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired116149309609328002608134323.5Browse results
ERX675466UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAHomo sapiensNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1317988810384608002637034550.5Browse results
ERX675467UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0034919 juvenile stage12.5 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired148432276741901002018823307Browse results
ERX675468UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0007222 late adult stage122 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired143583346352081001994223259Browse results
ERX675469UBERON:0005386 olfactory segment of nasal mucosaOlfactory mucosaUBERON:0018241 prime adult stage28 monthsmaleNANANACallithrix jacchusNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired154691126429325001981622937Browse results
ERX675470UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired114536237819425001482919104.5Browse results
ERX675471UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired118508389564248001962922052Browse results
ERX675472UBERON:0005386 olfactory segment of nasal mucosaolfactory mucosaUBERON:0000104 life cycleNANANANANAMacaca mulattaNAIlluminaIllumina HiSeq 2500FULL_LENGTH100paired1674913413670136001959022053.5Browse results

Showing 41 to 48 of 48 entries

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