Genotype-Tissue Expression (GTEx) Common Fund Project

Experiment ID:SRP012682
Technology:RNA-Seq
Description:The aim of the Genotype-Tissue Expression (GTEx) Project is to increase our understanding of how changes in our genes affect human health and disease with the ultimate goal of improving health care for future generations. GTEx will create a database that researchers can use to study how inherited changes in genes lead to common diseases. GTEx researchers are studying genes in different tissues obtained from many different people. The GTEx project also includes a study of the GTEx donor consent process - this study will help ensure that the consent process and other aspects of the project effectively address the concerns and expectations of participants in the study. GTEx is a pioneering project that uses state-of-the-art protocols for obtaining and storing a large range of organs and tissues, and for testing them in the lab. Until now, no project has analyzed genetic variation and expression in as many tissues from the same person in... (for more see dbGaP study page.)
Source:SRP012682  GTEx - dbGAP
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Bulk RNA-Seq processed expression values in Homo sapiens

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Showing 1 to 20 of 4847 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
SRX1154204UBERON:0008952 upper lobe of left lungLung - Inferior segment of left upper lobeHsapDv:0000240 sixth decade stage (human)age: 50-59maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH250paired8955649072237907003171538539Browse results
SRX197226UBERON:0009834 dorsolateral prefrontal cortexBrain-Frontal Cortex (BA9)HsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6178398053614701003276939183.5Browse results
SRX198113UBERON:0001120 left lobe of thyroid glandThyroid-non-nodular region - leftHsapDv:0000237 third decade stage (human)age: 20-29maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired7408381860631970003359539867Browse results
SRX198117UBERON:0001882 nucleus accumbensnucleus accumbensHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5364558643692094003198838553Browse results
SRX198120UBERON:0001120 left lobe of thyroid glandThyroid-non-nodular region - leftHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4466443331705339003231139109.5Browse results
SRX198134UBERON:0002084 heart left ventricleHeart-anterior left VentricleHsapDv:0000240 sixth decade stage (human)age: 50-59maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired7896105447320628003071437464Browse results
SRX198140UBERON:0008952 upper lobe of left lungLung - Inferior segment of left upper lobeHsapDv:0000240 sixth decade stage (human)age: 50-59maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5118461428415282003214738825Browse results
SRX198142UBERON:0001120 left lobe of thyroid glandThyroid-non-nodular region - leftHsapDv:0000240 sixth decade stage (human)age: 50-59femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5428444040867691003251039005Browse results
SRX198145UBERON:0001876 amygdalaamygdalaHsapDv:0000239 fifth decade stage (human)age: 40-49maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5560865638373028003120738063.5Browse results
SRX198148UBERON:0002084 heart left ventricleHeart-anterior left VentricleHsapDv:0000239 fifth decade stage (human)age: 40-49maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5369395639036718002997037156Browse results
SRX198152UBERON:0001873 caudate nucleuscaudate nucleusHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5282047138934956003139438273.5Browse results
SRX198155UBERON:0000178 bloodBlood-whole bloodHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5203123044647508002346933892Browse results
SRX198156UBERON:0001882 nucleus accumbensnucleus accumbensHsapDv:0000241 seventh decade stage (human)age: 60-69femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5145635143305268003277439227.5Browse results
SRX198165UBERON:0000178 bloodBlood-whole bloodHsapDv:0000237 third decade stage (human)age: 20-29maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6218281148045941002844335645.5Browse results
SRX198166UBERON:0001882 nucleus accumbensnucleus accumbensHsapDv:0000239 fifth decade stage (human)age: 40-49femaleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired6662411955121696003291639259.5Browse results
SRX198171UBERON:0008952 upper lobe of left lungLung - Inferior segment of left upper lobeHsapDv:0000237 third decade stage (human)age: 20-29maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4796880838435637003273739312Browse results
SRX198172UBERON:0001874 putamenputamenHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4653755630014076003107338101Browse results
SRX198181UBERON:0002810 right frontal lobeCerebral frontal pole-rightHsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired5801043545709248003260439178.5Browse results
SRX198185UBERON:0001120 left lobe of thyroid glandThyroid-non-nodular region - leftHsapDv:0000241 seventh decade stage (human)age: 60-69maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired7267380957350632003413640198.5Browse results
SRX198189UBERON:0002245 cerebellar hemisphereBrain-cerebellar hemisphereHsapDv:0000238 fourth decade stage (human)age: 30-39maleconfidential_restricted_dataNANAHomo sapiensNAIlluminaIllumina HiSeq 2000FULL_LENGTH76paired4619084426746312003148438353.5Browse results

Showing 1 to 20 of 4847 entries