Danio rerio

Gene : spaw - ENSDARG00000014309 - Danio rerio (zebrafish)

General information

Gene identifier

ENSDARG00000014309

Name

spaw

Description

southpaw [Source:ZFIN;Acc:ZDB-GENE-030219-1]

Organism

Danio rerio (zebrafish)

Synonym(s)

unm s457,ndr3,unm t30973,unm_s457,unm_t30973

Orthologs

36 orthologs

Paralogs

2 paralogs

Source data

Retrieve all processed expression values for that gene

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0003081lateral plate mesoderm98.574.16e-4See source data
RSCAIE
ZFA:0001065lateral mesoderm (Danio)82.494.00e-4See source data
RSCAIE
UBERON:2000001Kupffer's vesicle81.654.00e-4See source data
RSCAIE
UBERON:0005498primitive heart tube66.644.00e-4See source data
RSCAIE
UBERON:0003084heart primordium60.504.00e-4See source data
RSCAIE
ZFA:0000003adaxial cell (Danio)56.314.00e-4See source data
RSCAIE
UBERON:0009910posterior lateral plate mesoderm55.864.00e-4See source data
RSCAIE
UBERON:0005068neural rod55.524.00e-4See source data
RSCAIE
UBERON:0009881anterior lateral plate mesoderm55.244.00e-4See source data
RSCAIE
UBERON:2007031anterior neural rod52.924.00e-4See source data
RSCAIE
UBERON:0001894diencephalon50.968.00e-4See source data
RSCAIE

Showing 1 to 11 of 11 entries

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores
important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • in situ hybridization data: ZFIN

Sources of raw data:

  • in situ hybridization data: ZFIN

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0000206pharyngeal gill9.830.876See source data
RSCAIE
UBERON:0001474bone element10.100.361See source data
RSCAIE
UBERON:0002385muscle tissue10.231See source data
RSCAIE
UBERON:0019248early embryo11.511See source data
RSCAIE
UBERON:0000473testis12.680.185See source data
RSCAIE
UBERON:0000992ovary17.461See source data
RSCAIE
UBERON:0006860swim bladder17.801See source data
RSCAIE
UBERON:0000080mesonephros19.250.741See source data
RSCAIE
CL:0000094granulocyte20.300.46See source data
RSCAIE
UBERON:0007132head kidney20.950.611See source data
RSCAIE
UBERON:0000014zone of skin21.300.924See source data
RSCAIE
UBERON:0002548larva21.510.581See source data
RSCAIE
UBERON:0000948heart22.821See source data
RSCAIE
UBERON:0003982mature ovarian follicle23.471See source data
RSCAIE
UBERON:0000160intestine23.690.365See source data
RSCAIE
UBERON:0000033head23.751See source data
RSCAIE
UBERON:0002106spleen24.270.46See source data
RSCAIE
UBERON:0000019camera-type eye25.511See source data
RSCAIE
UBERON:0002107liver28.401See source data
RSCAIE
UBERON:0000966retina29.471See source data
RSCAIE

Showing 1 to 20 of 29 entries

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores
important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee
  • in situ hybridization data: ZFIN
  • RNA-Seq data: Bgee

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Otophysi

1 species

Astyanax mexicanus (Blind cave fish)
Compare expression
Clupeocephala

8 species

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)

Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Teleostei

9 species

Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)

Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Neopterygii

10 species

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)

Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Euteleostomi

15 species

Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Xenopus laevis (African clawed frog)













Xenopus tropicalis (western clawed frog)





Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)

Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)

Poecilia reticulata (Guppy)
Astatotilapia calliptera (Eastern happy)

Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Latimeria chalumnae (Coelacanth)
Compare expression

Showing 1 to 5 of 5 entries

Orthology information comes from OMA : ENSDARG00000014309.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
NeopterygiiCompare expression

Showing 1 to 1 of 1 entries

Paralogy information comes from OMA : ENSDARG00000014309.

Cross-references

Ensembl

ENSDARG00000014309 (spaw)

ZFIN

ZDB-GENE-030219-1 (spaw)

UniProtKB/TrEMBL

F1QX69,F1QX69_DANRE
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