Danio rerio

Gene : si:ch211-105c13.3 - ENSDARG00000089441 - Danio rerio (zebrafish)

General information

Gene identifier

ENSDARG00000089441

Name

si:ch211-105c13.3

Description

si:ch211-105c13.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4483]

Synonym(s)

fd10a10,wu:fd10a10

Orthologs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0006860swim bladder99.101.31e-11See source data
RSCAIE
UBERON:0000014zone of skin98.672.75e-13See source data
RSCAIE
UBERON:0000206pharyngeal gill92.922.28e-8See source data
RSCAIE
UBERON:0000948heart90.902.29e-7See source data
RSCAIE
UBERON:0002548larva90.033.43e-13See source data
RSCAIE
UBERON:4000164caudal fin89.022.66e-4See source data
RSCAIE
UBERON:0002082cardiac ventricle85.324.68e-4See source data
RSCAIE
UBERON:0000473testis83.634.63e-7See source data
RSCAIE
UBERON:0001474bone element82.823.12e-8See source data
RSCAIE
UBERON:0002385muscle tissue82.021.36e-6See source data
RSCAIE
UBERON:0004734gastrula78.488.36e-8See source data
RSCAIE
UBERON:0007132head kidney78.373.79e-7See source data
RSCAIE
UBERON:0000033head68.293.11e-9See source data
RSCAIE
UBERON:0002106spleen65.361.43e-4See source data
RSCAIE
UBERON:0002107liver62.791.30e-6See source data
RSCAIE
UBERON:0009620tail bud paraxial mesoderm61.360.001See source data
RSCAIE
UBERON:0000019camera-type eye58.932.91e-5See source data
RSCAIE
UBERON:0000160intestine58.528.49e-4See source data
RSCAIE
CL:0000094granulocyte50.720.004See source data
RSCAIE
UBERON:0000966retina48.260.008See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0019248early embryo19.670.662See source data
RSCAIE
UBERON:0003982mature ovarian follicle23.471See source data
RSCAIE
UBERON:0007010cleaving embryo42.250.99See source data
RSCAIE
UBERON:0003059presomitic mesoderm43.551See source data
RSCAIE
UBERON:0002329somite43.850.997See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Clupeocephala

7 species

Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Poecilia reticulata (Guppy)

Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Teleostei

8 species

Anguilla anguilla (European freshwater eel)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Poecilia reticulata (Guppy)

Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Neopterygii

9 species

Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Poecilia reticulata (Guppy)

Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Nothobranchius furzeri (Turquoise killifish)
Compare expression
Orthology information comes from OMA : ENSDARG00000089441.

Cross-references

Ensembl

ENSDARG00000089441 (si:ch211-105c13.3)

ZFIN

ZDB-GENE-030131-4483 (si:ch211-105c13.3)

UniProtKB/TrEMBL