Gene : CASC17 - ENSG00000260785 - Homo sapiens (human)
General information
Gene identifier
ENSG00000260785
Name
CASC17
Description
cancer susceptibility 17 [Source:HGNC Symbol;Acc:HGNC:43911]
Organism
Synonym(s)
Expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| CL:0000089 in UBERON:0000473male germ line stem cell (sensu Vertebrata) in testis | 80.47 | 0.02 | See source data | |
| CL:0000019sperm | 74.32 | 0.012 | See source data | |
| UBERON:0004534right testis | 66.31 | 2.21e-6 | See source data | |
| UBERON:0004533left testis | 65.62 | 6.21e-6 | See source data | |
| UBERON:0004023ganglionic eminence | 63.17 | 0.002 | See source data | |
| UBERON:0003053ventricular zone | 61.19 | 0.002 | See source data | |
| UBERON:0004252hindlimb stylopod muscle | 54.98 | 0.01 | See source data | |
| CL:0000670 in UBERON:0000991primordial germ cell in gonad | 54.96 | 0.006 | See source data | |
| CL:0000576monocyte | 51.57 | 0.018 | See source data | |
| UBERON:0000451prefrontal cortex | 49.32 | 0.012 | See source data | |
| UBERON:0000006islet of Langerhans | 49.05 | 0.007 | See source data | |
| UBERON:0003701calcaneal tendon | 48.54 | 0.031 | See source data | |
| UBERON:0001150body of pancreas | 46.83 | 0.004 | See source data | |
| UBERON:0001388gastrocnemius | 46.39 | 1.03e-4 | See source data | |
| UBERON:0001511skin of leg | 45.73 | 0.005 | See source data | |
| UBERON:0014890right hemisphere of cerebellum | 44.35 | 0.004 | See source data | |
| UBERON:0009835anterior cingulate cortex | 43.10 | 8.24e-4 | See source data | |
| UBERON:0001873caudate nucleus | 42.00 | 0.015 | See source data | |
| UBERON:0001874putamen | 41.88 | 0.011 | See source data | |
| UBERON:0001323tibial nerve | 41.76 | 0.002 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of annotations to anatomy and development:
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- single-cell RNA-Seq data: SRA
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Reported absence of expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| CL:0002336buccal mucosa cell | 34.85 | 0.605 | See source data | |
| UBERON:0007023adult organism | 35.28 | 0.672 | See source data | |
| UBERON:0006483Brodmann (1909) area 46 | 37.40 | 0.639 | See source data | |
| UBERON:0000007pituitary gland | 37.76 | 0.284 | See source data | |
| UBERON:0001782pigmented layer of retina | 38.55 | 0.857 | See source data | |
| UBERON:0000997mammalian vulva | 38.66 | 0.923 | See source data | |
| UBERON:0002771middle temporal gyrus | 38.72 | 0.975 | See source data | |
| UBERON:0004360cauda epididymis | 38.74 | 0.857 | See source data | |
| UBERON:0004358caput epididymis | 38.75 | 0.909 | See source data | |
| UBERON:0000998seminal vesicle | 38.75 | 0.962 | See source data | |
| UBERON:0002476lateral globus pallidus | 38.81 | 0.703 | See source data | |
| UBERON:0000979tibia | 38.93 | 0.893 | See source data | |
| UBERON:0004359corpus epididymis | 38.98 | 0.893 | See source data | |
| UBERON:0002736lateral nuclear group of thalamus | 39.00 | 0.733 | See source data | |
| UBERON:0005384nasal cavity epithelium | 39.04 | 0.836 | See source data | |
| UBERON:0002728entorhinal cortex | 39.05 | 0.954 | See source data | |
| UBERON:0001255urinary bladder | 39.09 | 0.962 | See source data | |
| UBERON:0001966substantia nigra pars reticulata | 39.11 | 0.813 | See source data | |
| UBERON:0001153caecum | 39.16 | 0.813 | See source data | |
| UBERON:0002477medial globus pallidus | 39.18 | 0.99 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Cross-references
Ensembl
HGNC
GeneCards