EXPANDE project

Experiment ID:DRP003810
Technology:RNA-Seq
Description:EXPression AloNg Development and Evolution (EXPANDE) project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief, taking advantages of Illumina sequencing, RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates (two or more biological replicates).
Source:DRP003810 SRA
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Bulk RNA-Seq processed expression values in Danio rerioBulk RNA-Seq processed expression values in Gallus gallusBulk RNA-Seq processed expression values in Mus musculus

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Showing 21 to 40 of 77 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX029556UBERON:0004734 gastrula100 pooled whole embryosZFS:0000020 Gastrula:75%-epiboly (Danio)75% epibolyNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3785053731997868002307525003Browse results
DRX029557UBERON:0004734 gastrula100 pooled whole embryosZFS:0000020 Gastrula:75%-epiboly (Danio)75% epibolyNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3252021527426679002311325049Browse results
DRX029558UBERON:0000922 embryo96 pooled whole embryosUBERON:0007236 8 cell stage8-cellNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3666991233175945002102324024Browse results
DRX029559UBERON:0000922 embryo114 pooled whole embryosUBERON:0007236 8 cell stage8-cellNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3708921933559929002099224024Browse results
DRX029560UBERON:0004734 gastrula100 pooled whole embryosZFS:0000021 Gastrula:90%-epiboly (Danio)90% epibolyNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3423980528785663002327825122.5Browse results
DRX029561UBERON:0004734 gastrula100 pooled whole embryosZFS:0000021 Gastrula:90%-epiboly (Danio)90% epibolyNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3572358630123995002335625184.5Browse results
DRX029562UBERON:0004734 gastrula100 pooled whole embryosZFS:0000022 Gastrula:Bud (Danio)bud stageNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4540291038241424002378525402Browse results
DRX029563UBERON:0004734 gastrula97 pooled whole embryosZFS:0000022 Gastrula:Bud (Danio)bud stageNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4104778234678370002371325363Browse results
DRX029564UBERON:0000922 embryo50 pooled whole embryosZFS:0000031 Pharyngula:Prim-25 (Danio)Prim 25NARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3544862729991342002458425836.5Browse results
DRX029565UBERON:0000922 embryo50 pooled whole embryosZFS:0000031 Pharyngula:Prim-25 (Danio)Prim 25NARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3750136131344469002466825871Browse results
DRX029566UBERON:0000922 embryo50 pooled whole embryosZFS:0000029 Pharyngula:Prim-5 (Danio)Prim5-6NARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3863129532913880002447225778.5Browse results
DRX029567UBERON:0000922 embryo50 pooled whole embryosZFS:0000029 Pharyngula:Prim-5 (Danio)Prim5-6NARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3678549731254987002451325820.5Browse results
DRX029568UBERON:0000922 embryo50 pooled whole embryosZFS:0000029 Pharyngula:Prim-5 (Danio)Prim5-6NARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3903332833269562002450325807.5Browse results
DRX029569UBERON:0004734 gastrula100 pooled whole embryosZFS:0000019 Gastrula:Shield (Danio)shield stageNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3834622032528790002339325177.5Browse results
DRX029570UBERON:0004734 gastrula100 pooled whole embryosZFS:0000019 Gastrula:Shield (Danio)shield stageNARiken WTNANADanio rerioNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3644397931135306002333025147.5Browse results
DRX029577UBERON:0000922 embryo5 pooled embryosGgalDv:0000031 Hamburger Hamilton stage 19 (chicken)HH19NANERANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4046411224554200001690617532.5Browse results
DRX029579UBERON:0000922 embryo5 pooled embryosGgalDv:0000035 Hamburger Hamilton stage 21 (chicken)HH21NANERANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4251043025953535001697017581.5Browse results
DRX029580UBERON:0000922 embryo5 pooled embryosGgalDv:0000035 Hamburger Hamilton stage 21 (chicken)HH21NANERANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3892499623675489001695017557.5Browse results
DRX029581UBERON:0000922 embryo5 pooled embryosGgalDv:0000038 Hamburger Hamilton stage 24 (chicken)HH24 (Toe plate)NANERANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4073124026393885001699717610Browse results
DRX029582UBERON:0000922 embryo5 pooled embryosGgalDv:0000038 Hamburger Hamilton stage 24 (chicken)HH24 (Toe plate)NANERANANAGallus gallusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4318411228632369001707517663.5Browse results

Showing 21 to 40 of 77 entries

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