EXPANDE project

Experiment ID:DRP003810
Technology:RNA-Seq
Description:EXPression AloNg Development and Evolution (EXPANDE) project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief, taking advantages of Illumina sequencing, RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates (two or more biological replicates).
Source:DRP003810 SRA
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Bulk RNA-Seq processed expression values in Danio rerioBulk RNA-Seq processed expression values in Gallus gallusBulk RNA-Seq processed expression values in Mus musculus

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Showing 61 to 77 of 77 entries

Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX029615UBERON:0000323 late embryo3 pooled embryosMmusDv:0000032 Theiler stage 23 (mouse)E15.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3927927330621480002676134027Browse results
DRX029616UBERON:0000323 late embryo2 pooled embryosMmusDv:0000033 Theiler stage 24 (mouse)E16.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3836739229546452002751934675.5Browse results
DRX029617UBERON:0000323 late embryo2 pooled embryosMmusDv:0000033 Theiler stage 24 (mouse)E16.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3884741730221072002726034454.5Browse results
DRX029618UBERON:0000323 late embryo2 pooled embryosMmusDv:0000033 Theiler stage 24 (mouse)E16.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3838622730251872002710634319.5Browse results
DRX029619UBERON:0000323 late embryo2 pooled embryosMmusDv:0000034 Theiler stage 25 (mouse)E17.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3831846430431573002729634473.5Browse results
DRX029620UBERON:0000323 late embryo2 pooled embryosMmusDv:0000034 Theiler stage 25 (mouse)E17.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3846390930264839002720534430Browse results
DRX029621UBERON:0000323 late embryo3 pooled embryosMmusDv:0000035 Theiler stage 26 (mouse)E18.5 (long wiskers)NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3776352429120470002760034716Browse results
DRX029622UBERON:0000323 late embryo3 pooled embryosMmusDv:0000035 Theiler stage 26 (mouse)E18.5 (long wiskers)NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4337246733814969002797534902.5Browse results
DRX029623UBERON:0000922 embryo37 pooled embryosUBERON:0000110 neurula stageE7.5 (neural plate)NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single5233550344831178002495032438Browse results
DRX029624UBERON:0000922 embryo33 pooled embryosUBERON:0000110 neurula stageE7.5 (neural plate)NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4320439935965717002438332091.5Browse results
DRX029625UBERON:0000922 embryo19 pooled embryosMmusDv:0000020 Theiler stage 13 (mouse)E.8.5 (Turning)NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4102200234000864002463432365.5Browse results
DRX029626UBERON:0000922 embryo28 pooled embryosMmusDv:0000020 Theiler stage 13 (mouse)E.8.5 (Turning)NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4616976238016620002490732517Browse results
DRX029627UBERON:0000922 embryo24 pooled embryosMmusDv:0000020 Theiler stage 13 (mouse)E.8.5 (Turning)NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4287951835608124002474532467.5Browse results
DRX029628UBERON:0000922 embryo15 pooled embryosMmusDv:0000021 Theiler stage 14 (mouse)E9.0NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4368547934639861002543932980Browse results
DRX029629UBERON:0000922 embryo14 pooled embryosMmusDv:0000021 Theiler stage 14 (mouse)E9.0NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single3890803630245590002509332795.5Browse results
DRX029630UBERON:0000922 embryo14 pooled embryosMmusDv:0000022 Theiler stage 15 (mouse)E9.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4139214130902194002543233039.5Browse results
DRX029631UBERON:0000922 embryo11 pooled embryosMmusDv:0000022 Theiler stage 15 (mouse)E9.5NAC57BL/6NANAMus musculusNAIlluminaIllumina HiSeq 2000FULL_LENGTH100single4937045036223933002584433286.5Browse results

Showing 61 to 77 of 77 entries

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