domestication_gene_expression

Experiment ID:ERP001694
Technology:RNA-Seq
Description:A comparison of brain gene expression patterns between several species pairs of domesticated and wild animals. Each pair consists of 5-6 wild and domesticated animals.
Source:ERP001694 SRA

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX240848UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired134494197243911001752519740.5Browse results
ERX240849UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2895933819246914002066322707Browse results
ERX240850UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH83single3503387620838825001887221016Browse results
ERX240851UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1810591214153306001994522265.5Browse results
ERX240852UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000112 sexually immature stage5 weeksfemaleHampshire X Yorkshire X Swedish LandraceNANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2055149015899480001999622293.5Browse results
ERX240853UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH83single4048236019154244001869120888Browse results
ERX240854UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000112 sexually immature stage5 weeksfemaleHampshire X Yorkshire X Swedish LandraceNANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2069145515764258002011222363.5Browse results
ERX240855UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0007222 late adult stageold adultmalemixed-breedNANACanis lupus familiarisNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired159782108416039001796120046Browse results
ERX240857UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0007222 late adult stageold adultmalemixed-breedNANACanis lupus familiarisNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2102216612520308001862720522Browse results
ERX240859UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2218052114507515001918221939.5Browse results
ERX240860UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired159315968691695001726319529.5Browse results
ERX240862UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1671492011265520001898621754Browse results
ERX240864UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1984607513932477001883221460Browse results
ERX240865UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000112 sexually immature stage5 weeksfemaleHampshire X Yorkshire X Swedish LandraceNANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1880940014517172002006722292Browse results
ERX240867UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0007222 late adult stageold adultfemalemixed-breedNANACanis lupus familiarisNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2063225312342705001849820415.5Browse results
ERX240868UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired145764628371904001736919649.5Browse results
ERX240869UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000112 sexually immature stage5 weeksfemaleHampshire X Yorkshire X Swedish LandraceNANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2836153719260194002101222950Browse results
ERX240870UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1944825110942859001788419943Browse results
ERX240871UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH76paired109702567634973001832921250.5Browse results
ERX240872UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2218221114323849001927621985.5Browse results