domestication_gene_expression

Experiment ID:ERP001694
Technology:RNA-Seq
Description:A comparison of brain gene expression patterns between several species pairs of domesticated and wild animals. Each pair consists of 5-6 wild and domesticated animals.
Source:ERP001694 SRA

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX240873UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1621966913096041001967222054.5Browse results
ERX240874UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0007222 late adult stageold adultfemalemixed-breedNANACanis lupus familiarisNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2168169412205098001878720644.5Browse results
ERX240875UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2077227813329903001916721944.5Browse results
ERX240876UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1614600111204844001701218361Browse results
ERX240878UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired147850348210638001738019620Browse results
ERX240879UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired158522259163898001760119706.5Browse results
ERX240880UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2334776614907099001738118738Browse results
ERX240883UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1429184110058309001687918232Browse results
ERX240884UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2026550013591169001909921853Browse results
ERX240885UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2482749716355674001949622158.5Browse results
ERX240886UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2432574416160891001739718678.5Browse results
ERX240888UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2194695510631232001727919515.5Browse results
ERX240889UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1922558012885384001721018586.5Browse results
ERX240890UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2667198713935407001830020187.5Browse results
ERX240891UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1526662912006088001952722001.5Browse results
ERX240893UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANACavia porcellusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1601825710402989001694618311Browse results
ERX240894UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1751882710217029001754219676Browse results
ERX240895UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000112 sexually immature stage5 weeksfemaleHampshire X Yorkshire X Swedish LandraceNANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2078027415093483002021322426.5Browse results
ERX240897UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired165217589520999001750119720.5Browse results
ERX240898UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0007222 late adult stageold adultmalemixed-breedNANACanis lupus familiarisNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1736793810124770001845420425.5Browse results