domestication_gene_expression

Experiment ID:ERP001694
Technology:RNA-Seq
Description:A comparison of brain gene expression patterns between several species pairs of domesticated and wild animals. Each pair consists of 5-6 wild and domesticated animals.
Source:ERP001694 SRA

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
ERX240899UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1875431510981086001768319794Browse results
ERX240900UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAmaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2095861813658190001919921971Browse results
ERX240901UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANASus scrofaNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired1722014513982452001934121903Browse results
ERX240902UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANARattus norvegicusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2009435613517794001893721658Browse results
ERX240903UBERON:0001870 frontal cortexbrain frontal cortexUBERON:0000104 life cycleNAfemaleNANANAOryctolagus cuniculusNAIlluminaIllumina Genome Analyzer IIFULL_LENGTH51paired2035714011307436001793619945.5Browse results