Xenopus laevis

Gene : lsm6.L - 447141 - Xenopus laevis (African clawed frog)

General information

Gene identifier

447141

Name

lsm6.L

Description

MGC85411 protein

Synonym(s)

XELAEV_18005517mg,lsm6,MGC85411,XELAEV_18009250mg

Orthologs

Paralogs

Expression

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entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0004734gastrula94.951.09e-10See source data
RSCAIE
CL:0000023oocyte94.951.69e-13See source data
RSCAIE
UBERON:0000307blastula93.062.50e-10See source data
RSCAIE
UBERON:0000992ovary91.096.01e-13See source data
RSCAIE
UBERON:0004455neurula embryo90.368.23e-9See source data
RSCAIE
UBERON:0001846internal ear88.481.83e-7See source data
RSCAIE
UBERON:0002385muscle tissue85.374.10e-7See source data
RSCAIE
UBERON:0002048lung84.072.36e-7See source data
RSCAIE
UBERON:0000955brain83.758.06e-7See source data
RSCAIE
UBERON:0000473testis83.554.42e-9See source data
RSCAIE
UBERON:0000014zone of skin83.003.20e-7See source data
RSCAIE
UBERON:0001264pancreas81.237.97e-7See source data
RSCAIE
UBERON:0000948heart79.753.03e-6See source data
RSCAIE
CL:0000025egg cell78.908.75e-9See source data
RSCAIE
UBERON:0002106spleen75.855.78e-6See source data
RSCAIE
UBERON:0000945stomach75.302.04e-6See source data
RSCAIE
UBERON:0002113kidney74.569.61e-7See source data
RSCAIE
UBERON:0000019camera-type eye73.563.18e-6See source data
RSCAIE
UBERON:0002107liver72.851.20e-5See source data
RSCAIE
UBERON:0000160intestine63.837.54e-6See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

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entries

No reported absence of expression for this gene

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Xenopus

1 species

Xenopus tropicalis (western clawed frog)
Compare expression
Chordata

2 species

Xenopus tropicalis (western clawed frog)
Branchiostoma lanceolatum (Common lancelet)

2 genes

Compare expression
Bilateria

6 genes

FBgn0034564 CG9344
WBGene00003080 lsm-6
ENSXETG00000023683 lsm6
BL18688 LSM6
FBgn0081701 Dpse\GA21716
FBgn0183292 Dsim\GD11551
Compare expression

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
Xenopus

2 genes

108699439 lsm6.L
447141 lsm6.L
Compare expression
Metazoa

4 genes

108699439 lsm6.L
108711072 snrpf
380595 snrpf
447141 lsm6.L
Compare expression