Homo sapiens

Gene : PGLYRP4 - ENSG00000163218 - Homo sapiens (human)

General information

Gene identifier

ENSG00000163218

Name

PGLYRP4

Description

peptidoglycan recognition protein 4 [Source:HGNC Symbol;Acc:HGNC:30015]

Synonym(s)

pgrpib,pglyrpibeta,sbbi67,pgrp-ibeta

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0035834lower esophagus mucosa85.102.22e-10See source data
RSCAIE
UBERON:0001416skin of abdomen83.812.26e-13See source data
RSCAIE
UBERON:0001511skin of leg82.454.02e-13See source data
RSCAIE
UBERON:0004262upper leg skin77.500.01See source data
RSCAIE
UBERON:0004801cervix epithelium76.240.023See source data
RSCAIE
UBERON:0001385tibialis anterior74.930.011See source data
RSCAIE
UBERON:0000331ileal mucosa71.830.01See source data
RSCAIE
CL:0002079pancreatic ductal cell71.390.015See source data
RSCAIE
UBERON:0000996vagina71.21<= 1.00e-14See source data
RSCAIE
UBERON:0000989penis67.810.003See source data
RSCAIE
UBERON:0000997mammalian vulva67.590.01See source data
RSCAIE
CL:0000670 in UBERON:0000991primordial germ cell in gonad67.472.28e-4See source data
RSCAIE
UBERON:0001812palpebral conjunctiva67.020.032See source data
RSCAIE
UBERON:0000167oral cavity63.390.033See source data
RSCAIE
UBERON:0002370thymus62.260.045See source data
RSCAIE
UBERON:0001476deltoid60.570.02See source data
RSCAIE
UBERON:0002372tonsil60.032.55e-8See source data
RSCAIE
UBERON:0005386olfactory segment of nasal mucosa58.121.72e-6See source data
RSCAIE
UBERON:0000941cranial nerve II57.270.01See source data
RSCAIE
UBERON:0002030nipple56.760.033See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee
  • single-cell RNA-Seq data: Bgee
  • RNA-Seq data: Bgee

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0010533metanephros cortex19.471See source data
RSCAIE
UBERON:0004991mucosa of transverse colon19.911See source data
RSCAIE
UBERON:0002196adenohypophysis20.210.283See source data
RSCAIE
UBERON:0002098apex of heart20.281See source data
RSCAIE
CL:0000094granulocyte20.631See source data
RSCAIE
UBERON:0035827right adrenal gland cortex21.531See source data
RSCAIE
UBERON:0018303adrenal tissue22.290.672See source data
RSCAIE
UBERON:0009853body of uterus22.980.302See source data
RSCAIE
UBERON:0003701calcaneal tendon23.081See source data
RSCAIE
UBERON:0002245cerebellar hemisphere23.811See source data
RSCAIE
UBERON:0001876amygdala24.110.736See source data
RSCAIE
UBERON:0014890right hemisphere of cerebellum24.151See source data
RSCAIE
UBERON:0001882nucleus accumbens24.471See source data
RSCAIE
UBERON:0001873caudate nucleus24.520.785See source data
RSCAIE
UBERON:0006631right atrium auricular region25.280.654See source data
RSCAIE
UBERON:0001874putamen25.961See source data
RSCAIE
UBERON:0002118right ovary26.270.294See source data
RSCAIE
UBERON:0002167right lung26.550.12See source data
RSCAIE
UBERON:0035805muscle layer of sigmoid colon27.030.373See source data
RSCAIE
UBERON:0010414omental fat pad27.330.456See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Homininae

3 species

Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Compare expression
Catarrhini

9 species

Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Simiiformes

10 species

Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Euarchontoglires

13 species

Mus musculus (mouse)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Rattus norvegicus (rat)
Compare expression
Boreoeutheria

20 species

Mus musculus (mouse)
Felis catus (cat)
Equus caballus (horse)
Sus scrofa (pig)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Compare expression
Orthology information comes from OMA : ENSG00000163218.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
Theria

1 gene

Compare expression
Paralogy information comes from OMA : ENSG00000163218.

Cross-references

CCDS

CCDS30871 (CCDS30871.1)

Ensembl

ENSG00000163218 (PGLYRP4)

HGNC

HGNC:30015 (PGLYRP4)

UniProtKB/Swiss-Prot