Gene : SHOC1 - ENSG00000165181 - Homo sapiens (human)
General information
Gene identifier
ENSG00000165181
Name
SHOC1
Description
shortage in chiasmata 1 [Source:HGNC Symbol;Acc:HGNC:26535]
Organism
Synonym(s)
Orthologs
Expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| CL:0002079pancreatic ductal cell | 87.33 | 0.02 | See source data | |
| CL:0000019sperm | 84.74 | 0.002 | See source data | |
| CL:0000089 in UBERON:0000473male germ line stem cell (sensu Vertebrata) in testis | 83.17 | 1.06e-6 | See source data | |
| UBERON:0004534right testis | 79.63 | 2.49e-8 | See source data | |
| UBERON:0004533left testis | 79.11 | 2.06e-8 | See source data | |
| CL:0002336buccal mucosa cell | 77.49 | 0.003 | See source data | |
| UBERON:0018303adrenal tissue | 75.19 | 9.01e-8 | See source data | |
| CL:0000670 in UBERON:0000991primordial germ cell in gonad | 72.67 | 1.34e-6 | See source data | |
| UBERON:0010533metanephros cortex | 65.42 | 5.86e-8 | See source data | |
| UBERON:0035827right adrenal gland cortex | 64.82 | 2.75e-7 | See source data | |
| UBERON:0000082adult mammalian kidney | 62.34 | 1.26e-7 | See source data | |
| UBERON:0003701calcaneal tendon | 61.73 | 2.97e-4 | See source data | |
| UBERON:0035825left adrenal gland cortex | 61.41 | 1.48e-9 | See source data | |
| UBERON:0000178blood | 61.17 | 6.03e-6 | See source data | |
| UBERON:0007023adult organism | 59.18 | 0.008 | See source data | |
| CL:0002328bronchial epithelial cell | 59.13 | 0.009 | See source data | |
| UBERON:0002336corpus callosum | 58.02 | 6.04e-5 | See source data | |
| UBERON:0004804oviduct epithelium | 56.51 | 0.035 | See source data | |
| UBERON:0000997mammalian vulva | 54.72 | 0.031 | See source data | |
| UBERON:0035834lower esophagus mucosa | 54.11 | 0.002 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of annotations to anatomy and development:
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- single-cell RNA-Seq data: SRA
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Reported absence of expression
Show
entries
Anatomical entity | Expression score | FDR | Link to source data | Sources |
|---|---|---|---|---|
| UBERON:0002810right frontal lobe | 33.14 | 0.185 | See source data | |
| UBERON:0001199mucosa of stomach | 33.64 | 0.233 | See source data | |
| UBERON:0001554skin of hip | 34.34 | 0.1 | See source data | |
| UBERON:0006483Brodmann (1909) area 46 | 37.40 | 0.98 | See source data | |
| UBERON:0001302right uterine tube | 37.94 | 0.055 | See source data | |
| UBERON:0001782pigmented layer of retina | 38.55 | 0.992 | See source data | |
| UBERON:0002771middle temporal gyrus | 38.72 | 0.98 | See source data | |
| UBERON:0004360cauda epididymis | 38.74 | 0.99 | See source data | |
| UBERON:0004358caput epididymis | 38.75 | 0.987 | See source data | |
| UBERON:0000998seminal vesicle | 38.75 | 0.975 | See source data | |
| UBERON:0002476lateral globus pallidus | 38.81 | 0.923 | See source data | |
| UBERON:0000979tibia | 38.93 | 0.975 | See source data | |
| UBERON:0004359corpus epididymis | 38.98 | 0.561 | See source data | |
| UBERON:0002736lateral nuclear group of thalamus | 39.00 | 0.962 | See source data | |
| UBERON:0002728entorhinal cortex | 39.05 | 0.997 | See source data | |
| UBERON:0001966substantia nigra pars reticulata | 39.11 | 0.813 | See source data | |
| UBERON:0002483trabecular bone tissue | 39.18 | 0.992 | See source data | |
| UBERON:0011876body of tongue | 39.22 | 0.975 | See source data | |
| UBERON:0002581postcentral gyrus | 39.23 | 0.997 | See source data | |
| UBERON:0001965substantia nigra pars compacta | 39.23 | 0.935 | See source data |
Sources
A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data
Expression scores
3.25e4 lightgrey: low confidence scores
important score variation
Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.
Sources of raw data:
- Affymetrix data: ArrayExpress, GEO
- RNA-Seq data: GEO, GTEx - dbGAP, SRA
Orthologs
Taxon Name | Species with orthologs | Gene(s) | Expression comparison | See details |
|---|---|---|---|---|
| Homininae | 3 species | 3 genes | Compare expression | |
| Catarrhini | 9 species | 9 genes | Compare expression | |
| Simiiformes | 10 species | 10 genes | Compare expression | |
| Euarchontoglires | 14 species | 14 genes | Compare expression | |
| Boreoeutheria | 21 species | 21 genes | Compare expression | |
| Theria | 22 species | 22 genes | Compare expression | |
| Tetrapoda | 23 species | 23 genes | Compare expression |
Cross-references
CCDS
Ensembl
HGNC
EMBL
GeneCards
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL