Homo sapiens

Gene : TM6SF2 - ENSG00000213996 - Homo sapiens (human)

General information

Gene identifier

ENSG00000213996

Name

TM6SF2

Description

transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]

Synonym(s)

lpr4

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0000331ileal mucosa97.900.01See source data
RSCAIE
UBERON:0000399jejunal mucosa94.740.002See source data
RSCAIE
UBERON:0002114duodenum94.72<= 1.00e-14See source data
RSCAIE
UBERON:0001114right lobe of liver94.351.62e-14See source data
RSCAIE
UBERON:0003454small intestine Peyer's patch90.13<= 1.00e-14See source data
RSCAIE
CL:0000089 in UBERON:0000473male germ line stem cell (sensu Vertebrata) in testis88.510.004See source data
RSCAIE
CL:0000670 in UBERON:0000991primordial germ cell in gonad85.224.00e-5See source data
RSCAIE
UBERON:0004991mucosa of transverse colon81.754.80e-11See source data
RSCAIE
CL:0002255stromal cell of endometrium72.192.56e-7See source data
RSCAIE
UBERON:0000082adult mammalian kidney70.912.40e-12See source data
RSCAIE
UBERON:0001052rectum70.041.20e-8See source data
RSCAIE
UBERON:0003053ventricular zone70.021.39e-6See source data
RSCAIE
UBERON:0004023ganglionic eminence69.951.26e-7See source data
RSCAIE
UBERON:0000458endocervix68.561.03e-8See source data
RSCAIE
UBERON:0001625right coronary artery66.263.81e-7See source data
RSCAIE
UBERON:0001626left coronary artery64.853.35e-8See source data
RSCAIE
UBERON:0006631right atrium auricular region64.676.79e-7See source data
RSCAIE
UBERON:0001496ascending aorta64.648.22e-8See source data
RSCAIE
UBERON:0002098apex of heart64.427.15e-6See source data
RSCAIE
UBERON:0002196adenohypophysis63.958.58e-9See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

  • Affymetrix data: Bgee
  • single-cell RNA-Seq data: Bgee
  • RNA-Seq data: Bgee

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0003701calcaneal tendon27.660.898See source data
RSCAIE
CL:0000576monocyte31.611See source data
RSCAIE
CL:0000094granulocyte35.280.487See source data
RSCAIE
UBERON:0015488sural nerve35.361See source data
RSCAIE
UBERON:0005343cortical plate36.471See source data
RSCAIE
UBERON:0002336corpus callosum38.810.557See source data
RSCAIE
UBERON:0004262upper leg skin39.950.1See source data
RSCAIE
UBERON:0001304germinal epithelium of ovary40.330.495See source data
RSCAIE
UBERON:0001951epithelium of nasopharynx40.450.836See source data
RSCAIE
UBERON:0001765mammary duct40.800.552See source data
RSCAIE
UBERON:0005030mucosa of paranasal sinus40.980.836See source data
RSCAIE
UBERON:0001812palpebral conjunctiva41.100.516See source data
RSCAIE
UBERON:0001614superficial temporal artery41.330.429See source data
RSCAIE
UBERON:0000397colonic epithelium42.030.761See source data
RSCAIE
CL:0002092bone marrow cell43.200.53See source data
RSCAIE
UBERON:0007023adult organism48.550.213See source data
RSCAIE
UBERON:0001782pigmented layer of retina49.110.6See source data
RSCAIE
UBERON:0001554skin of hip50.590.1See source data
RSCAIE
UBERON:0000998seminal vesicle50.780.605See source data
RSCAIE
UBERON:0001379vastus lateralis50.880.671See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Homininae

3 species

Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Compare expression
Catarrhini

9 species

Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Simiiformes

10 species

Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Compare expression
Euarchontoglires

13 species

Mus musculus (mouse)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Rattus norvegicus (rat)
Compare expression
Boreoeutheria

19 species

Mus musculus (mouse)
Canis lupus familiaris (dog)
Equus caballus (horse)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Compare expression
Theria

20 species

Mus musculus (mouse)
Canis lupus familiaris (dog)
Equus caballus (horse)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Mammalia

21 species

Mus musculus (mouse)
Canis lupus familiaris (dog)
Equus caballus (horse)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Amniota

23 species

Mus musculus (mouse)
Canis lupus familiaris (dog)
Equus caballus (horse)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Compare expression
Tetrapoda

25 species

Mus musculus (mouse)
Canis lupus familiaris (dog)
Equus caballus (horse)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Xenopus tropicalis (western clawed frog)
Compare expression
Sarcopterygii

26 species

Mus musculus (mouse)
Canis lupus familiaris (dog)
Equus caballus (horse)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Xenopus tropicalis (western clawed frog)
Latimeria chalumnae (Coelacanth)
Compare expression
Euteleostomi

39 species

Mus musculus (mouse)
Danio rerio (zebrafish)
Canis lupus familiaris (dog)
Equus caballus (horse)
Bos taurus (cattle)
Capra hircus (Goat)
Ovis aries (Sheep)
Cavia porcellus (guinea pig)
Gallus gallus (chicken)
Meleagris gallopavo (Wild turkey)
Ornithorhynchus anatinus (platypus)
Callithrix jacchus (White-tufted-ear marmoset)
Cercocebus atys (Sooty mangabey)
Macaca fascicularis (Crab-eating macaque)
Macaca mulatta (macaque)
Macaca nemestrina (Pig-tailed macaque)
Papio anubis (Olive baboon)
Gorilla gorilla (gorilla)
Pan paniscus (bonobo)
Pan troglodytes (chimpanzee)
Chlorocebus sabaeus (Green monkey)
Manis javanica (Malayan pangolin)
Rattus norvegicus (rat)
Monodelphis domestica (opossum)
Xenopus laevis (African clawed frog)

Xenopus tropicalis (western clawed frog)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Esox lucius (Northern pike)
Salmo salar (Atlantic salmon)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)
Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Latimeria chalumnae (Coelacanth)

40 genes

Compare expression
Orthology information comes from OMA : ENSG00000213996.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
Gnathostomata

1 gene

Compare expression
Paralogy information comes from OMA : ENSG00000213996.

Cross-references

CCDS

CCDS42528 (CCDS42528.1)

Ensembl

HGNC

HGNC:11861 (TM6SF2)

UniProtKB/Swiss-Prot