Salmo salar

Gene : MED30 - ENSSSAG00000077686 - Salmo salar (Atlantic salmon)

General information

Gene identifier

ENSSSAG00000077686

Name

MED30

Description

mediator of RNA polymerase II transcription subunit 30-like [Source:NCBI gene;Acc:106588497]

Synonym(s)

loc106588497

Orthologs

Paralogs

Expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0000992ovary91.704.32e-9See source data
RSCAIE
UBERON:2005272immature gonad83.908.89e-8See source data
RSCAIE
UBERON:0000473testis81.842.81e-6See source data
RSCAIE
UBERON:0007021sexually immature organism81.272.27e-9See source data
RSCAIE
UBERON:0007132head kidney80.764.76e-6See source data
RSCAIE
UBERON:0001046hindgut79.844.68e-6See source data
RSCAIE
UBERON:0002116ileum77.646.49e-6See source data
RSCAIE
UBERON:0005870olfactory pit77.063.80e-6See source data
RSCAIE
UBERON:0000014zone of skin74.363.83e-6See source data
RSCAIE
UBERON:0001045midgut74.031.45e-5See source data
RSCAIE
UBERON:0002535gill71.948.06e-5See source data
RSCAIE
UBERON:0009120gill filament70.801.18e-4See source data
RSCAIE
UBERON:0000019camera-type eye70.062.45e-4See source data
RSCAIE
UBERON:0000206pharyngeal gill69.613.73e-5See source data
RSCAIE
UBERON:0006908fast muscle tissue69.590.001See source data
RSCAIE
UBERON:0000080mesonephros68.866.21e-5See source data
RSCAIE
UBERON:0002106spleen67.931.70e-4See source data
RSCAIE
UBERON:0002328notochord67.542.52e-4See source data
RSCAIE
UBERON:4300174actinopterygian pyloric caecum66.277.04e-5See source data
RSCAIE
UBERON:0000955brain65.343.90e-5See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Reported absence of expression

Show

entries

Anatomical entity
Expression score
FDR
Link to source data
Sources
UBERON:0001968semen59.370.081See source data
RSCAIE

Sources

A Affimetrix
E EST
I In Situ
R RNA-Seq
SC scRNA-Seq
datano data

Expression scores

3.25e4 lightgrey: low confidence scores

important score variation

Expression scores of expression calls is based on the rank of a gene in a condition according to its expression levels (non-parametric statistics), normalized using the minimum and maximum Rank of the species. Values of Expression scores are between 0 and 100. Low score means that the gene is lowly expressed in the condition compared to other genes. Scores are normalized and comparable across genes, conditions and species.

Sources of annotations to anatomy and development:

Sources of raw data:

Orthologs

Taxon Name
Species with orthologs
Gene(s)
Expression comparison
See details
Protacanthopterygii

1 species

Esox lucius (Northern pike)

1 gene

Compare expression
Euteleosteomorpha

9 species

Esox lucius (Northern pike)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)

Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)

10 genes

Compare expression
Clupeocephala

11 species

Danio rerio (zebrafish)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)

Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)

12 genes

Compare expression
Teleostei

12 species

Danio rerio (zebrafish)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)

Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)

13 genes

Compare expression
Neopterygii

13 species

Danio rerio (zebrafish)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)

Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)

14 genes

Compare expression
Chordata

14 species

Danio rerio (zebrafish)
Lepisosteus oculatus (Spotted gar)
Anguilla anguilla (European freshwater eel)
Astyanax mexicanus (Blind cave fish)
Esox lucius (Northern pike)
Gadus morhua (Atlantic cod)
Poecilia reticulata (Guppy)

Oryzias latipes (Japanese rice fish)
Astatotilapia calliptera (Eastern happy)
Neolamprologus brichardi (Fairy cichlid)
Scophthalmus maximus (Turbot)
Gasterosteus aculeatus (Three-spined stickleback)
Nothobranchius furzeri (Turquoise killifish)
Branchiostoma lanceolatum (Common lancelet)

15 genes

Compare expression
Orthology information comes from OMA : ENSSSAG00000077686.

Paralogs (same species)

Taxon Name
Gene(s)
Expression comparison
See details
VertebrataCompare expression
Paralogy information comes from OMA : ENSSSAG00000077686.

Cross-references

Ensembl

UniProtKB/TrEMBL