Transcriptome of Japanese medaka adult tissues

Experiment ID:DRP008259
Technology:RNA-Seq
Description:In order to investigate the regulatory properties that contribute to the stability and evolutionary conservation of gene expression, we focused on pleiotropic expression. To determine the number of tissues in which each gene was expressed, we collected transcriptome data for tissues of adult medaka fish (O. latipes). We selected a total of 25 different tissues to cover as much of the body as possible. A total of four replicates were obtained for each tissue, two from males and two from females. Each data was derived from one individual, not pooled. We found a moderate tendency that genes expressed in many tissues are less likely to fluctuate in expression levels among individuals and more likely to be evolutionarily conserved in expression levels.
Source:DRP008259 DDBJ
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Bulk RNA-Seq processed expression values in Oryzias latipes

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Library ID
Identifier of the RNA-Seq library
Anat. entity ID
ID of the anatomical localization of the sample
Anat. entity name
Name of the anatomical localization of the sample
Anat. entity author annotation
Free text annotation of anatomical localization of the sample as provided by authors
Stage ID
ID of the developmental and life stage of the sample
Stage name
Name of the developmental and life stage of the sample
Stage author annotation
Free text annotation of the developmental and life stage of the sample as provided by authors
Sex
Annotation of the sex of the sample
Strain
Annotation of the strain of the sample
Time
Free text annotation of the time of sampling as provided by authors
Time unit
Unit for the time of sampling as provided by authors
Species
Physiological status
Physiological status of the organism at time of sampling
Technology
Sequencing platform
Sequenced transcript part
Possible values are: full length, all parts of the transcript are sequenced; 3': only the 3' end of the transcript is sequenced; 5': only the 5' end of the transcript is sequenced.
Fragmentation
Size of the RNA fragmentation
Run sequencing type
Paired-end or single-read run
Total read count
Total number of reads for the library.
Mapped read count
Number of reads that could be mapped to the transcriptome.
Total UMI count
Total number of individual RNA molecules (UMI) for the annotated sample. Only applicable for libraries producing UMIs.
Mapped UMI count
Number of UMIs that could be mapped to the transcriptome. Only applicable for libraries producing UMIs.
Distinct rank count
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, number of distinct ranks observed, to have a value of the power for distinguishing expression levels. Used as a weight to compute a weighted mean rank accross samples for each gene and compute expression scores in Bgee.
Max rank
When performing a fractional ranking of the genes in the annotated sample, based on their expression level, maximum rank attained in the sample. Used to normalize ranks accross samples and compute expression scores in Bgee.
Link to processed expression values
See the processed expression value results for this assay
DRX298698UBERON:0001003 skin epidermisepidermisUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1716454014454156001983921885.5Browse results
DRX298699UBERON:0001003 skin epidermisepidermisUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1226454710106421001989421918.5Browse results
DRX298700UBERON:0001003 skin epidermisepidermisUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired72412515810818001928321590.5Browse results
DRX298701UBERON:0001003 skin epidermisepidermisUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired111940768934849001982121869.5Browse results
DRX298702UBERON:0000970 eyeeyeUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired115173668844611002130822613.5Browse results
DRX298703UBERON:0000970 eyeeyeUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired3261167825319874002201922990Browse results
DRX298704UBERON:0000970 eyeeyeUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1401873910566053002143122698Browse results
DRX298705UBERON:0000970 eyeeyeUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired96647027211136002146222710.5Browse results
DRX298706UBERON:0001890 forebrainforebrainUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired2280073716722962002157122777.5Browse results
DRX298707UBERON:0001890 forebrainforebrainUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired118920658545754002109022508.5Browse results
DRX298708UBERON:0001890 forebrainforebrainUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1582723011302614002117022553Browse results
DRX298709UBERON:0001890 forebrainforebrainUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired131732689404663002104122506.5Browse results
DRX298710UBERON:0001041 foregutforegutUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired79878476605592001858021223.5Browse results
DRX298711UBERON:0001041 foregutforegutUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1698323214328277001889121405Browse results
DRX298712UBERON:0001041 foregutforegutUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1230479610236199001883921357Browse results
DRX298713UBERON:0001041 foregutforegutUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1387786311353761001953121731.5Browse results
DRX298714UBERON:0002110 gall bladdergallbladUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired81111366700280001860421245Browse results
DRX298715UBERON:0002110 gall bladdergallbladUBERON:0000113 post-juvenileadultfemaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired1192581010253901001941021649.5Browse results
DRX298716UBERON:0002110 gall bladdergallbladUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired74467246578451001882021345.5Browse results
DRX298717UBERON:0002110 gall bladdergallbladUBERON:0000113 post-juvenileadultmaleDRRNANAOryzias latipesNAIlluminaNextSeq 550FULL_LENGTH152paired59097124792449001805220925Browse results

Showing 21 to 40 of 100 entries

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